Variant report

Variant	rs73824433
Chromosome Location	chr4:75118968-75118969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11942036	1.00[AMR][1000 genomes]
rs11946885	1.00[AMR][1000 genomes]
rs1440405	1.00[AMR][1000 genomes]
rs1440406	1.00[AMR][1000 genomes]
rs1460005	1.00[EUR][1000 genomes]
rs16850793	1.00[EUR][1000 genomes]
rs16850798	1.00[EUR][1000 genomes]
rs16850813	1.00[EUR][1000 genomes]
rs16850818	1.00[EUR][1000 genomes]
rs16850842	1.00[EUR][1000 genomes]
rs16850845	1.00[EUR][1000 genomes]
rs16850847	1.00[EUR][1000 genomes]
rs16850852	1.00[EUR][1000 genomes]
rs16850933	1.00[EUR][1000 genomes]
rs16850945	1.00[EUR][1000 genomes]
rs1993664	1.00[EUR][1000 genomes]
rs4694665	1.00[AMR][1000 genomes]
rs55946357	1.00[AMR][1000 genomes]
rs56000473	1.00[AMR][1000 genomes]
rs56006412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56192801	1.00[EUR][1000 genomes]
rs56236141	1.00[AMR][1000 genomes]
rs57516973	1.00[EUR][1000 genomes]
rs57935899	0.88[AFR][1000 genomes]
rs58215609	1.00[EUR][1000 genomes]
rs58250046	1.00[AMR][1000 genomes]
rs58398242	1.00[EUR][1000 genomes]
rs59142088	1.00[EUR][1000 genomes]
rs59172186	1.00[EUR][1000 genomes]
rs59175703	1.00[EUR][1000 genomes]
rs60181583	1.00[EUR][1000 genomes]
rs60336088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60560556	1.00[EUR][1000 genomes]
rs60633195	1.00[AMR][1000 genomes]
rs61119489	1.00[EUR][1000 genomes]
rs6830535	1.00[EUR][1000 genomes]
rs6836879	1.00[EUR][1000 genomes]
rs725142	1.00[EUR][1000 genomes]
rs73824429	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73824435	1.00[EUR][1000 genomes]
rs73824446	1.00[EUR][1000 genomes]
rs73824447	1.00[EUR][1000 genomes]
rs73824448	1.00[EUR][1000 genomes]
rs73824449	1.00[EUR][1000 genomes]
rs73824453	1.00[EUR][1000 genomes]
rs73824457	1.00[EUR][1000 genomes]
rs73824458	1.00[EUR][1000 genomes]
rs73824469	1.00[EUR][1000 genomes]
rs73827550	1.00[AMR][1000 genomes]
rs73827558	1.00[AMR][1000 genomes]
rs73827561	1.00[AMR][1000 genomes]
rs7687073	1.00[AMR][1000 genomes]
rs922136	1.00[EUR][1000 genomes]
rs9685225	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1013260	chr4:75013441-75121643	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002907	chr4:75013441-75131443	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1004706	chr4:75014770-75121643	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75114800-75119200	Weak transcription	Pancreas	Pancrea
2	chr4:75115800-75120000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:75116400-75120000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr4:75117400-75119200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:75117400-75120000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr4:75117600-75119800	ZNF genes & repeats	NHEK	skin
7	chr4:75117800-75119200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:75118000-75119200	Weak transcription	Right Ventricle	heart
9	chr4:75118200-75119000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr4:75118200-75119000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:75118200-75119200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links