Variant report

Variant	rs922136
Chromosome Location	chr4:75180563-75180564
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:75092889..75094695-chr4:75179646..75182331,2	K562	blood:
2	chr4:75169221..75170914-chr4:75178436..75180818,2	K562	blood:
3	chr4:75180503..75182464-chr4:75594905..75597285,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10518119	1.00[TSI][hapmap]
rs10938110	1.00[TSI][hapmap]
rs11947475	1.00[TSI][hapmap]
rs1460005	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16850793	1.00[EUR][1000 genomes]
rs16850798	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16850813	1.00[EUR][1000 genomes]
rs16850818	1.00[EUR][1000 genomes]
rs16850842	1.00[EUR][1000 genomes]
rs16850845	0.88[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16850847	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16850852	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16850933	0.91[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16850945	1.00[EUR][1000 genomes]
rs1993664	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4694665	1.00[TSI][hapmap]
rs479117	1.00[TSI][hapmap]
rs522698	1.00[TSI][hapmap]
rs56192801	1.00[EUR][1000 genomes]
rs57516973	1.00[EUR][1000 genomes]
rs58215609	1.00[EUR][1000 genomes]
rs58398242	1.00[EUR][1000 genomes]
rs59142088	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59172186	1.00[EUR][1000 genomes]
rs59175703	1.00[EUR][1000 genomes]
rs60181583	1.00[EUR][1000 genomes]
rs60560556	1.00[EUR][1000 genomes]
rs61119489	1.00[EUR][1000 genomes]
rs6830535	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6836879	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs725142	1.00[EUR][1000 genomes]
rs73824433	1.00[EUR][1000 genomes]
rs73824435	1.00[EUR][1000 genomes]
rs73824446	1.00[EUR][1000 genomes]
rs73824447	1.00[EUR][1000 genomes]
rs73824448	1.00[EUR][1000 genomes]
rs73824449	1.00[EUR][1000 genomes]
rs73824453	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73824457	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73824458	1.00[EUR][1000 genomes]
rs73824469	1.00[EUR][1000 genomes]
rs9685225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75149800-75186200	Weak transcription	K562	blood
2	chr4:75175000-75186400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:75175400-75185600	Weak transcription	Osteobl	bone
4	chr4:75175600-75186600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:75175600-75189000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:75176800-75186600	Weak transcription	Esophagus	oesophagus
7	chr4:75177600-75185800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:75177600-75186200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:75178000-75182600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:75178000-75183800	Strong transcription	HMEC	breast
11	chr4:75178200-75180800	Strong transcription	Hela-S3	cervix
12	chr4:75178200-75182200	Strong transcription	NHEK	skin
13	chr4:75178200-75183600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:75179600-75182600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:75179800-75180800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:75180000-75181200	Enhancers	GM12878-XiMat	blood
17	chr4:75180000-75181600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:75180000-75182600	Enhancers	Primary hematopoietic stem cells	blood

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