Variant report

Variant	rs73824435
Chromosome Location	chr4:75119956-75119957
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1460005	1.00[EUR][1000 genomes]
rs16850793	1.00[EUR][1000 genomes]
rs16850798	1.00[EUR][1000 genomes]
rs16850813	1.00[EUR][1000 genomes]
rs16850818	1.00[EUR][1000 genomes]
rs16850842	1.00[EUR][1000 genomes]
rs16850845	1.00[EUR][1000 genomes]
rs16850847	1.00[EUR][1000 genomes]
rs16850852	1.00[EUR][1000 genomes]
rs16850933	1.00[EUR][1000 genomes]
rs16850945	1.00[EUR][1000 genomes]
rs1993664	1.00[EUR][1000 genomes]
rs55928564	1.00[AMR][1000 genomes]
rs56192801	1.00[EUR][1000 genomes]
rs57516973	1.00[EUR][1000 genomes]
rs58215609	1.00[EUR][1000 genomes]
rs58398242	1.00[EUR][1000 genomes]
rs59142088	1.00[EUR][1000 genomes]
rs59172186	1.00[EUR][1000 genomes]
rs59175703	1.00[EUR][1000 genomes]
rs60181583	1.00[EUR][1000 genomes]
rs60560556	1.00[EUR][1000 genomes]
rs61119489	1.00[EUR][1000 genomes]
rs6830535	1.00[EUR][1000 genomes]
rs6836879	1.00[EUR][1000 genomes]
rs725142	1.00[EUR][1000 genomes]
rs73824433	1.00[EUR][1000 genomes]
rs73824446	1.00[EUR][1000 genomes]
rs73824447	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73824448	1.00[EUR][1000 genomes]
rs73824449	1.00[EUR][1000 genomes]
rs73824453	1.00[EUR][1000 genomes]
rs73824457	1.00[EUR][1000 genomes]
rs73824458	1.00[EUR][1000 genomes]
rs73824469	1.00[EUR][1000 genomes]
rs73827536	1.00[AMR][1000 genomes]
rs922136	1.00[EUR][1000 genomes]
rs9685225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1013260	chr4:75013441-75121643	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002907	chr4:75013441-75131443	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1004706	chr4:75014770-75121643	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75115800-75120000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:75116400-75120000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
3	chr4:75117400-75120000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr4:75119000-75120000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:75119600-75120000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:75119600-75124600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:75119600-75124800	Weak transcription	Right Ventricle	heart
8	chr4:75119600-75125000	Weak transcription	Lung	lung
9	chr4:75119800-75120200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:75119800-75120800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:75119800-75123200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:75119800-75124800	Weak transcription	Esophagus	oesophagus
13	chr4:75119800-75124800	Weak transcription	K562	blood
14	chr4:75119800-75125000	Weak transcription	Pancreas	Pancrea
15	chr4:75119800-75125800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:75119800-75133200	Weak transcription	NHEK	skin
17	chr4:75119800-75148800	Weak transcription	Aorta	Aorta

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