Variant report

Variant	rs16850813
Chromosome Location	chr4:75133713-75133714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:75131662..75133777-chr4:75138644..75141998,3	K562	blood:
2	chr4:75133705..75136322-chr4:75143940..75145615,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1460005	1.00[EUR][1000 genomes]
rs16850793	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16850798	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16850818	1.00[EUR][1000 genomes]
rs16850842	1.00[EUR][1000 genomes]
rs16850845	1.00[EUR][1000 genomes]
rs16850847	1.00[EUR][1000 genomes]
rs16850852	1.00[EUR][1000 genomes]
rs16850933	1.00[EUR][1000 genomes]
rs16850945	1.00[EUR][1000 genomes]
rs1993664	1.00[EUR][1000 genomes]
rs56192801	1.00[EUR][1000 genomes]
rs57516973	1.00[EUR][1000 genomes]
rs58215609	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58398242	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59142088	1.00[EUR][1000 genomes]
rs59172186	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59175703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60181583	1.00[EUR][1000 genomes]
rs60560556	1.00[EUR][1000 genomes]
rs61119489	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6830535	1.00[EUR][1000 genomes]
rs6836879	1.00[EUR][1000 genomes]
rs725142	1.00[EUR][1000 genomes]
rs73824433	1.00[EUR][1000 genomes]
rs73824435	1.00[EUR][1000 genomes]
rs73824446	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73824447	1.00[EUR][1000 genomes]
rs73824448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73824449	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73824453	1.00[EUR][1000 genomes]
rs73824457	1.00[EUR][1000 genomes]
rs73824458	1.00[EUR][1000 genomes]
rs73824469	1.00[EUR][1000 genomes]
rs922136	1.00[EUR][1000 genomes]
rs9685225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75119800-75148800	Weak transcription	Aorta	Aorta
2	chr4:75120000-75141200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:75125200-75142600	Weak transcription	K562	blood
4	chr4:75125200-75158800	Weak transcription	Left Ventricle	heart
5	chr4:75130000-75133800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:75130000-75140200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:75131400-75134800	Weak transcription	Psoas Muscle	Psoas
8	chr4:75131800-75134600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:75132000-75135000	Enhancers	HMEC	breast
10	chr4:75132200-75157800	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:75133000-75134800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:75133200-75133800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:75133200-75134200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:75133200-75134600	Enhancers	Hela-S3	cervix
15	chr4:75133200-75134800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:75133400-75133800	Enhancers	Esophagus	oesophagus
17	chr4:75133400-75134200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr4:75133400-75134600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:75133400-75134600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:75133400-75134600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:75133400-75134800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:75133400-75134800	Enhancers	Osteobl	bone
23	chr4:75133400-75135000	Enhancers	NH-A	brain
24	chr4:75133600-75133800	Genic enhancers	Primary T cells from cord blood	blood
25	chr4:75133600-75134000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:75133600-75134000	Flanking Active TSS	NHEK	skin
27	chr4:75133600-75134200	Enhancers	HUVEC	blood vessel
28	chr4:75133600-75134400	Enhancers	HSMM	muscle
29	chr4:75133600-75134400	Enhancers	NHDF-Ad	bronchial
30	chr4:75133600-75134800	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links