Variant report

Variant	rs73825170
Chromosome Location	chr3:23914674-23914675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23914292..23917263-chr3:23918458..23921233,2	K562	blood:
2	chr3:23913990..23915626-chr3:23916378..23919022,2	K562	blood:

Variant related genes	Relation type
ENSG00000231395	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1133926	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1136155	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706297	0.87[ASN][1000 genomes]
rs11710647	0.87[ASN][1000 genomes]
rs11710679	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11711073	0.87[ASN][1000 genomes]
rs11711380	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713246	0.90[ASN][1000 genomes]
rs11718625	1.00[ASN][1000 genomes]
rs12497944	0.90[ASN][1000 genomes]
rs13314607	0.90[ASN][1000 genomes]
rs13318927	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13325754	0.90[ASN][1000 genomes]
rs1397880	0.87[ASN][1000 genomes]
rs1567581	0.90[ASN][1000 genomes]
rs17014081	0.82[ASN][1000 genomes]
rs17787211	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2361013	0.87[ASN][1000 genomes]
rs28522849	0.87[ASN][1000 genomes]
rs28623591	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34476593	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35711415	0.90[ASN][1000 genomes]
rs35886023	0.87[ASN][1000 genomes]
rs4131864	0.90[ASN][1000 genomes]
rs60699428	0.82[ASN][1000 genomes]
rs61294694	0.87[ASN][1000 genomes]
rs61645368	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62253361	0.90[ASN][1000 genomes]
rs62253380	0.90[ASN][1000 genomes]
rs62253382	0.90[ASN][1000 genomes]
rs62253383	0.82[ASN][1000 genomes]
rs62253387	0.84[ASN][1000 genomes]
rs6550809	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6778970	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6787216	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800407	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72627066	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73825116	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73825124	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73825178	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825181	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7629325	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7637968	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8933	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938078	0.87[ASN][1000 genomes]
rs9815334	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834166	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9836860	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836970	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838694	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9850255	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9856727	0.84[ASN][1000 genomes]
rs9857442	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863605	0.84[ASN][1000 genomes]
rs9863674	0.90[ASN][1000 genomes]
rs9875213	0.90[ASN][1000 genomes]
rs9876561	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	esv3409136	chr3:23912173-23914721	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23901200-23914800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:23901200-23915400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:23901200-23915400	Weak transcription	HSMM	muscle
4	chr3:23901200-23942000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:23901400-23915200	Weak transcription	NHEK	skin
6	chr3:23901800-23928800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:23901800-23935600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:23903400-23929400	Weak transcription	Dnd41	blood
9	chr3:23904000-23918200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr3:23904800-23930800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:23906400-23922000	Weak transcription	Primary T cells from cord blood	blood
12	chr3:23906600-23931800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr3:23907000-23918400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr3:23907000-23920400	Weak transcription	Primary B cells from cord blood	blood
15	chr3:23907200-23915400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:23907400-23915400	Weak transcription	HMEC	breast
17	chr3:23907600-23917600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:23907600-23920000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:23907600-23922200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr3:23907600-23940200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:23908000-23915000	Weak transcription	Ovary	ovary
22	chr3:23908000-23915400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:23908000-23915400	Weak transcription	Aorta	Aorta
24	chr3:23908000-23915400	Weak transcription	NH-A	brain
25	chr3:23908000-23915600	Weak transcription	Esophagus	oesophagus
26	chr3:23908000-23916200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:23908000-23918200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:23908000-23918400	Weak transcription	Spleen	Spleen
29	chr3:23908000-23918600	Weak transcription	Stomach Mucosa	stomach
30	chr3:23908000-23918800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:23908000-23922400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:23908000-23923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:23908000-23931600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr3:23908000-23935600	Weak transcription	Fetal Kidney	kidney
35	chr3:23908000-23935600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr3:23908000-23940200	Weak transcription	Gastric	stomach
37	chr3:23908200-23914800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:23908200-23915200	Weak transcription	NHLF	lung
39	chr3:23908200-23915400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr3:23908200-23915600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr3:23908200-23915800	Weak transcription	Brain Substantia Nigra	brain
42	chr3:23908200-23916200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:23908200-23919400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr3:23908200-23930400	Weak transcription	HepG2	liver
45	chr3:23908400-23915400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr3:23908400-23915800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr3:23908400-23916000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr3:23908600-23915800	Weak transcription	Brain Anterior Caudate	brain
49	chr3:23909200-23915400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:23909200-23916000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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