Variant report

Variant	rs17014081
Chromosome Location	chr3:24086516-24086517
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1133926	0.84[JPT][hapmap]
rs1136155	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11705746	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11706297	0.82[ASN][1000 genomes]
rs11708328	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11709111	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11709760	0.86[EUR][1000 genomes]
rs11710679	0.82[JPT][hapmap]
rs11711073	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11711380	0.82[ASN][1000 genomes]
rs11713246	0.85[JPT][hapmap]
rs11714770	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714787	0.86[EUR][1000 genomes]
rs11718240	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11718625	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11721182	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12497944	0.82[JPT][hapmap]
rs13318927	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs13325754	0.82[JPT][hapmap]
rs1397880	0.82[ASN][1000 genomes]
rs17014136	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17787211	0.86[JPT][hapmap]
rs2063480	0.88[CHB][hapmap]
rs2063481	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2089848	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2361013	0.82[ASN][1000 genomes]
rs28503241	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28623591	0.82[ASN][1000 genomes]
rs28702740	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34476593	0.82[ASN][1000 genomes]
rs35316896	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4131864	0.82[JPT][hapmap]
rs4561770	0.88[CHB][hapmap]
rs61294694	0.82[ASN][1000 genomes]
rs6787216	0.82[ASN][1000 genomes]
rs6789983	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs73822696	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73825170	0.82[ASN][1000 genomes]
rs73825178	0.82[ASN][1000 genomes]
rs7623641	0.88[CHB][hapmap]
rs7634184	0.88[CHB][hapmap]
rs7645692	0.82[EUR][1000 genomes]
rs8933	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs938078	0.82[ASN][1000 genomes]
rs949715	0.86[EUR][1000 genomes]
rs9815334	0.82[ASN][1000 genomes]
rs9836860	0.82[ASN][1000 genomes]
rs9836970	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9850255	0.82[ASN][1000 genomes]
rs9857442	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9876561	0.82[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079600-24090400	Weak transcription	Lung	lung
2	chr3:24079800-24088200	Weak transcription	Spleen	Spleen
3	chr3:24082200-24087000	Enhancers	Colon Smooth Muscle	Colon
4	chr3:24083400-24089000	Weak transcription	Psoas Muscle	Psoas
5	chr3:24084600-24087200	Enhancers	Rectal Smooth Muscle	rectum
6	chr3:24084600-24088600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:24084600-24088800	Weak transcription	HSMMtube	muscle
8	chr3:24084600-24089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:24084600-24089400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:24084800-24088600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:24084800-24088800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:24084800-24088800	Weak transcription	NHLF	lung
13	chr3:24085000-24087800	Weak transcription	NHDF-Ad	bronchial
14	chr3:24085000-24088200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:24085000-24088600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:24085000-24088800	Weak transcription	Ovary	ovary
17	chr3:24085000-24089000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:24085000-24089000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:24085000-24089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:24085200-24088800	Weak transcription	Adipose Nuclei	Adipose
21	chr3:24085200-24089200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:24086200-24086600	Enhancers	Aorta	Aorta
23	chr3:24086200-24086600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr3:24086200-24088800	Weak transcription	Placenta	Placenta

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