Variant report
| Variant | rs949715 |
|---|---|
| Chromosome Location | chr3:24126325-24126326 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11705746 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11708328 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11709111 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11709760 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11714770 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11714787 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11718240 | 0.89[EUR][1000 genomes] |
| rs11721182 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17014081 | 0.86[EUR][1000 genomes] |
| rs17014136 | 0.95[EUR][1000 genomes] |
| rs1799888 | 0.90[ASN][1000 genomes] |
| rs1868573 | 0.90[ASN][1000 genomes] |
| rs2063481 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2089848 | 0.92[EUR][1000 genomes] |
| rs2278802 | 0.84[EUR][1000 genomes] |
| rs28503241 | 0.96[EUR][1000 genomes] |
| rs28702740 | 0.96[EUR][1000 genomes] |
| rs35316896 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6782978 | 0.93[ASN][1000 genomes] |
| rs73822696 | 0.93[EUR][1000 genomes] |
| rs7645692 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533980 | chr3:23445901-24311972 | ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 64 gene(s) | inside rSNPs | diseases |
| 2 | nsv834639 | chr3:24037113-24233925 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004037 | chr3:24064777-24143719 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:24119600-24128200 | Weak transcription | Aorta | Aorta |
