Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11705746	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11708328	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11709111	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11714770	0.98[EUR][1000 genomes]
rs11714787	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718240	0.89[EUR][1000 genomes]
rs11721182	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17014081	0.86[EUR][1000 genomes]
rs17014136	0.95[EUR][1000 genomes]
rs1799888	0.90[ASN][1000 genomes]
rs1868573	0.90[ASN][1000 genomes]
rs2001209	0.85[CHD][hapmap]
rs2063481	1.00[CEU][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2089848	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs2278802	0.84[EUR][1000 genomes]
rs2360958	0.88[MEX][hapmap]
rs2360959	0.84[CHB][hapmap];0.86[MEX][hapmap]
rs28503241	0.96[EUR][1000 genomes]
rs28702740	0.96[EUR][1000 genomes]
rs35316896	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4624512	0.92[CHB][hapmap]
rs6765461	0.92[CHB][hapmap];0.88[MEX][hapmap]
rs6778970	0.85[CHD][hapmap];0.85[JPT][hapmap]
rs6782978	0.93[ASN][1000 genomes]
rs6800407	0.85[JPT][hapmap]
rs73822696	0.93[EUR][1000 genomes]
rs7645692	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949715	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11709760	TOP2B	cis	cerebellum	SCAN
rs11709760	ART5	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24119600-24128200	Weak transcription	Aorta	Aorta
2	chr3:24127000-24128800	Enhancers	Adipose Nuclei	Adipose
3	chr3:24127200-24128800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:24127200-24129000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:24127200-24129000	Enhancers	NHDF-Ad	bronchial
6	chr3:24127400-24128200	Enhancers	HepG2	liver
7	chr3:24127400-24129000	Enhancers	Fetal Lung	lung

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