Variant report

Variant	rs17014136
Chromosome Location	chr3:24158647-24158648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24157117..24159322-chr3:24165644..24167732,2	MCF-7	breast:
2	chr3:24152256..24154912-chr3:24158314..24160502,3	K562	blood:
3	chr3:24153412..24157403-chr3:24157612..24160502,5	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1133926	0.82[JPT][hapmap]
rs11705746	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708328	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11709111	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11709760	0.95[EUR][1000 genomes]
rs11713246	0.82[JPT][hapmap]
rs11714770	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714787	0.95[EUR][1000 genomes]
rs11718240	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11721182	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497944	0.82[JPT][hapmap]
rs13325754	0.82[JPT][hapmap]
rs17014081	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2063480	0.88[CHB][hapmap];0.80[MEX][hapmap]
rs2063481	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2089848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2278802	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28503241	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28702740	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35316896	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131864	0.82[JPT][hapmap]
rs4561770	0.88[CHB][hapmap]
rs6769645	0.86[ASN][1000 genomes]
rs6782978	0.82[EUR][1000 genomes]
rs73822696	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7609948	0.86[ASN][1000 genomes]
rs7623641	0.88[CHB][hapmap]
rs7634184	0.88[CHB][hapmap]
rs7645692	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs949715	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17014136	ART5	trans	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24143800-24160800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:24148400-24163000	Weak transcription	Aorta	Aorta
3	chr3:24149000-24164000	Weak transcription	Left Ventricle	heart
4	chr3:24153800-24161000	Weak transcription	Psoas Muscle	Psoas
5	chr3:24154000-24160200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:24154000-24160600	Weak transcription	NHDF-Ad	bronchial
7	chr3:24154000-24160800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:24154000-24161000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:24154200-24160000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:24155800-24164000	Weak transcription	Fetal Lung	lung
11	chr3:24155800-24169600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:24156200-24158800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:24157000-24158800	Weak transcription	Liver	Liver
15	chr3:24157000-24163800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:24157400-24173000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:24158400-24161000	Weak transcription	Fetal Intestine Small	intestine
18	chr3:24158600-24159000	Strong transcription	Fetal Intestine Large	intestine

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