Variant report

Variant	rs2278802
Chromosome Location	chr3:24169313-24169314
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24164644..24167419-chr3:24168645..24170327,2	K562	blood:
2	chr3:24159805..24161876-chr3:24167480..24170203,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10428188	0.88[EUR][1000 genomes]
rs11705746	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11708328	0.90[EUR][1000 genomes]
rs11709111	0.82[EUR][1000 genomes]
rs11709760	0.84[EUR][1000 genomes]
rs11710330	0.88[EUR][1000 genomes]
rs11714770	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11714787	0.84[EUR][1000 genomes]
rs11718010	0.86[EUR][1000 genomes]
rs11721182	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17014136	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2063481	0.87[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2084565	0.88[EUR][1000 genomes]
rs2089848	0.87[CEU][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs28503241	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28702740	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35316896	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3752874	0.88[EUR][1000 genomes]
rs3772381	0.88[EUR][1000 genomes]
rs3821440	0.88[EUR][1000 genomes]
rs55640600	0.87[EUR][1000 genomes]
rs59417168	0.85[EUR][1000 genomes]
rs6769645	0.97[ASN][1000 genomes]
rs6782978	0.90[EUR][1000 genomes]
rs73822696	0.80[ASN][1000 genomes]
rs73825924	0.86[EUR][1000 genomes]
rs7609948	0.97[ASN][1000 genomes]
rs7645692	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs949715	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24155800-24169600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:24157400-24173000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:24158800-24169800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:24158800-24170200	Strong transcription	Liver	Liver
6	chr3:24159800-24169600	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:24160400-24173000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:24161000-24170200	Strong transcription	Fetal Intestine Small	intestine
9	chr3:24161200-24173000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:24161200-24176400	Weak transcription	Pancreas	Pancrea
11	chr3:24161400-24169600	Weak transcription	Gastric	stomach
12	chr3:24161400-24169600	Weak transcription	Lung	lung
13	chr3:24161400-24170600	Weak transcription	Psoas Muscle	Psoas
14	chr3:24161800-24173000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:24162400-24170000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:24162800-24178200	Weak transcription	Spleen	Spleen
17	chr3:24164400-24169600	Weak transcription	Left Ventricle	heart
18	chr3:24165000-24173400	Weak transcription	Right Ventricle	heart
19	chr3:24165200-24169600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:24165200-24169600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:24165200-24173200	Weak transcription	Placenta	Placenta
22	chr3:24165400-24169400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:24165400-24169400	Weak transcription	HMEC	breast
24	chr3:24165600-24169400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:24165600-24169600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:24165600-24169600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:24165600-24169600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:24165600-24169600	Weak transcription	Right Atrium	heart
29	chr3:24165600-24170000	Weak transcription	Osteobl	bone
30	chr3:24165800-24169400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr3:24165800-24169800	Weak transcription	HSMM	muscle
32	chr3:24165800-24169800	Weak transcription	HSMMtube	muscle
33	chr3:24165800-24171400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr3:24165800-24179000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:24166400-24169400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:24166400-24169600	Weak transcription	NHDF-Ad	bronchial
37	chr3:24167000-24197800	Weak transcription	K562	blood
38	chr3:24167200-24169400	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr3:24167800-24187800	Weak transcription	Small Intestine	intestine
40	chr3:24168200-24169400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:24168200-24169400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:24168200-24169400	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr3:24168200-24170000	Strong transcription	Fetal Intestine Large	intestine
44	chr3:24168400-24170400	Strong transcription	HepG2	liver
45	chr3:24168600-24179200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:24168800-24169400	Enhancers	Hela-S3	cervix
47	chr3:24168800-24181200	Weak transcription	Brain Angular Gyrus	brain
48	chr3:24169000-24170000	Enhancers	Esophagus	oesophagus
49	chr3:24169000-24171600	Enhancers	NHLF	lung
50	chr3:24169000-24173000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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