Variant report

Variant	rs10428188
Chromosome Location	chr3:24186625-24186626
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24178878..24181434-chr3:24185620..24188715,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11710330	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718010	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2063481	0.83[CHD][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.83[TSI][hapmap]
rs2084565	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089848	0.82[JPT][hapmap]
rs2278802	0.88[EUR][1000 genomes]
rs3752874	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772381	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821440	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55640600	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59417168	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825924	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9844739	0.80[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:24167000-24197800	Weak transcription	K562	blood
3	chr3:24167800-24187800	Weak transcription	Small Intestine	intestine
4	chr3:24169000-24187800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:24173000-24187400	Weak transcription	Fetal Brain Male	brain
6	chr3:24173600-24188200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:24175800-24187800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:24179800-24187800	Weak transcription	Spleen	Spleen
9	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
10	chr3:24180200-24187000	Weak transcription	Right Ventricle	heart
11	chr3:24180600-24186800	Weak transcription	HMEC	breast
12	chr3:24181200-24187800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:24181200-24187800	Weak transcription	Right Atrium	heart
14	chr3:24181400-24187800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:24182000-24188000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:24182000-24194400	Weak transcription	Fetal Kidney	kidney
17	chr3:24183400-24198000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:24183800-24186800	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:24183800-24187400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:24183800-24187400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:24184000-24187000	Weak transcription	Brain Angular Gyrus	brain
22	chr3:24184200-24187000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:24184600-24196200	Weak transcription	HepG2	liver
24	chr3:24185000-24193200	Weak transcription	Fetal Lung	lung
25	chr3:24185400-24187000	Weak transcription	Adipose Nuclei	Adipose
26	chr3:24185400-24187600	Weak transcription	Left Ventricle	heart
27	chr3:24185400-24187800	Weak transcription	Gastric	stomach
28	chr3:24185400-24187800	Weak transcription	Lung	lung
29	chr3:24185400-24187800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:24185400-24187800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr3:24185400-24188000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr3:24185400-24193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:24185400-24195200	Weak transcription	Brain Anterior Caudate	brain
34	chr3:24185600-24187400	Weak transcription	Psoas Muscle	Psoas
35	chr3:24185600-24187600	Weak transcription	Fetal Stomach	stomach
36	chr3:24186000-24187400	Enhancers	NHDF-Ad	bronchial
37	chr3:24186200-24186800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:24186200-24186800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:24186200-24186800	Enhancers	Placenta Amnion	Placenta Amnion
40	chr3:24186200-24186800	Enhancers	Stomach Mucosa	stomach
41	chr3:24186200-24187000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:24186200-24187200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:24186200-24187200	Enhancers	HSMMtube	muscle
44	chr3:24186200-24187400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:24186200-24187400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr3:24186200-24187400	Enhancers	NHLF	lung
47	chr3:24186200-24187600	Enhancers	HSMM	muscle
48	chr3:24186200-24187800	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr3:24186200-24188600	Enhancers	Placenta	Placenta
50	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine

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