Variant report

Variant	rs55640600
Chromosome Location	chr3:24184662-24184663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10428188	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710330	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718010	0.84[EUR][1000 genomes]
rs2084565	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278802	0.87[EUR][1000 genomes]
rs3752874	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772381	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821440	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59417168	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825924	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:24167000-24197800	Weak transcription	K562	blood
3	chr3:24167800-24187800	Weak transcription	Small Intestine	intestine
4	chr3:24169000-24187800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:24169800-24186200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:24171400-24186200	Strong transcription	Fetal Intestine Large	intestine
7	chr3:24173000-24187400	Weak transcription	Fetal Brain Male	brain
8	chr3:24173600-24188200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:24174400-24184800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:24175800-24187800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:24176800-24186400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:24177200-24186200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:24177200-24186200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:24177200-24186200	Weak transcription	Placenta	Placenta
15	chr3:24178400-24186200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:24178600-24185400	Strong transcription	Adipose Nuclei	Adipose
17	chr3:24179000-24186200	Weak transcription	NHLF	lung
18	chr3:24179800-24187800	Weak transcription	Spleen	Spleen
19	chr3:24180000-24185000	Weak transcription	Gastric	stomach
20	chr3:24180000-24185200	Weak transcription	Lung	lung
21	chr3:24180000-24186400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
23	chr3:24180200-24187000	Weak transcription	Right Ventricle	heart
24	chr3:24180400-24186200	Weak transcription	Stomach Mucosa	stomach
25	chr3:24180400-24186200	Weak transcription	HSMMtube	muscle
26	chr3:24180600-24186400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:24180600-24186800	Weak transcription	HMEC	breast
28	chr3:24181200-24186000	Weak transcription	NHDF-Ad	bronchial
29	chr3:24181200-24187800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:24181200-24187800	Weak transcription	Right Atrium	heart
31	chr3:24181400-24187800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr3:24181600-24186200	Weak transcription	HSMM	muscle
33	chr3:24182000-24186200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:24182000-24188000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr3:24182000-24194400	Weak transcription	Fetal Kidney	kidney
36	chr3:24182200-24185400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:24182400-24185000	Weak transcription	Fetal Stomach	stomach
38	chr3:24182400-24185400	Strong transcription	Aorta	Aorta
39	chr3:24182600-24185000	Strong transcription	Fetal Lung	lung
40	chr3:24182600-24185000	Weak transcription	Psoas Muscle	Psoas
41	chr3:24182600-24185000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:24182600-24186600	Strong transcription	Liver	Liver
43	chr3:24182800-24185000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:24183200-24186400	Strong transcription	Fetal Intestine Small	intestine
45	chr3:24183400-24185000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:24183400-24198000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:24183600-24185400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:24183800-24185400	Strong transcription	Stomach Smooth Muscle	stomach
49	chr3:24183800-24186800	Weak transcription	Colon Smooth Muscle	Colon
50	chr3:24183800-24187400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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