Variant report

Variant	rs73825924
Chromosome Location	chr3:24179626-24179627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24175902..24178335-chr3:24178418..24180590,2	MCF-7	breast:
2	chr3:24176023..24178197-chr3:24178620..24181461,2	K562	blood:
3	chr3:24178878..24181434-chr3:24185620..24188715,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10428188	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710330	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718010	0.83[EUR][1000 genomes]
rs2084565	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278802	0.86[EUR][1000 genomes]
rs3752874	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772381	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821440	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55640600	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59417168	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782978	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:24167000-24197800	Weak transcription	K562	blood
3	chr3:24167800-24187800	Weak transcription	Small Intestine	intestine
4	chr3:24168800-24181200	Weak transcription	Brain Angular Gyrus	brain
5	chr3:24169000-24187800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:24169800-24186200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:24170800-24184600	Weak transcription	Brain Anterior Caudate	brain
8	chr3:24171400-24186200	Strong transcription	Fetal Intestine Large	intestine
9	chr3:24173000-24187400	Weak transcription	Fetal Brain Male	brain
10	chr3:24173600-24188200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:24173800-24183200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:24174000-24183400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:24174200-24182800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:24174400-24184800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr3:24175800-24187800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:24176800-24186400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:24177200-24186200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:24177200-24186200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:24177200-24186200	Weak transcription	Placenta	Placenta
20	chr3:24177800-24181800	Enhancers	Colon Smooth Muscle	Colon
21	chr3:24178200-24179800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr3:24178200-24179800	Enhancers	Spleen	Spleen
23	chr3:24178200-24180200	Enhancers	Hela-S3	cervix
24	chr3:24178200-24180400	Enhancers	Stomach Mucosa	stomach
25	chr3:24178200-24180600	Genic enhancers	Aorta	Aorta
26	chr3:24178400-24183800	Enhancers	Rectal Smooth Muscle	rectum
27	chr3:24178400-24186200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:24178600-24179800	Enhancers	Placenta Amnion	Placenta Amnion
29	chr3:24178600-24180600	Strong transcription	Fetal Lung	lung
30	chr3:24178600-24182400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr3:24178600-24185400	Strong transcription	Adipose Nuclei	Adipose
32	chr3:24178800-24180200	Enhancers	Right Ventricle	heart
33	chr3:24178800-24180400	Weak transcription	NHDF-Ad	bronchial
34	chr3:24178800-24180600	Enhancers	Psoas Muscle	Psoas
35	chr3:24178800-24180600	Enhancers	HMEC	breast
36	chr3:24178800-24182400	Enhancers	Stomach Smooth Muscle	stomach
37	chr3:24179000-24180000	Enhancers	Duodenum Mucosa	Duodenum
38	chr3:24179000-24180000	Enhancers	Lung	lung
39	chr3:24179000-24180000	Enhancers	Pancreas	Pancrea
40	chr3:24179000-24180000	Strong transcription	HepG2	liver
41	chr3:24179000-24180200	Genic enhancers	Fetal Intestine Small	intestine
42	chr3:24179000-24180600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr3:24179000-24180800	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr3:24179000-24181200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:24179000-24186200	Weak transcription	NHLF	lung
46	chr3:24179200-24179800	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr3:24179200-24179800	Enhancers	HSMMtube	muscle
48	chr3:24179200-24180000	Genic enhancers	Fetal Stomach	stomach
49	chr3:24179200-24180400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:24179400-24179800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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