Variant report

Variant	rs11721182
Chromosome Location	chr3:24127172-24127173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1133926	0.84[JPT][hapmap]
rs1136155	0.82[JPT][hapmap]
rs11705746	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708328	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11709111	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11709760	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11711073	0.82[JPT][hapmap]
rs11713246	0.85[JPT][hapmap]
rs11714770	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714787	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11718240	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11718625	0.82[JPT][hapmap]
rs12497944	0.82[JPT][hapmap]
rs13318927	0.86[JPT][hapmap]
rs13325754	0.82[JPT][hapmap]
rs17014081	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17014136	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063480	0.88[CHB][hapmap]
rs2063481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2089848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2278802	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28503241	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28702740	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35316896	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131864	0.82[JPT][hapmap]
rs4561770	0.88[CHB][hapmap]
rs6769645	0.86[ASN][1000 genomes]
rs6789983	0.82[JPT][hapmap]
rs73822696	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7609948	0.86[ASN][1000 genomes]
rs7623641	0.88[CHB][hapmap]
rs7634184	0.88[CHB][hapmap]
rs7645692	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8933	0.82[JPT][hapmap]
rs949715	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9836970	0.85[JPT][hapmap]
rs9857442	0.82[JPT][hapmap]
rs9876561	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24119600-24128200	Weak transcription	Aorta	Aorta
2	chr3:24127000-24128800	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links