Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr3:24142503-24142773	K562	blood:	n/a	n/a
2	JUND	chr3:24142452-24142808	HepG2	liver:	n/a	n/a
3	CEBPB	chr3:24142189-24142895	A549	lung:	n/a	chr3:24142621-24142632
4	CEBPB	chr3:24142330-24142821	HepG2	liver:	n/a	chr3:24142621-24142632
5	CEBPB	chr3:24142489-24142732	HepG2	liver:	n/a	chr3:24142621-24142632
6	CEBPB	chr3:24142449-24142781	IMR90	lung:	n/a	chr3:24142621-24142632
7	CEBPB	chr3:24142277-24142810	A549	lung:	n/a	chr3:24142621-24142632
8	EP300	chr3:24142547-24142823	HepG2	liver:	n/a	n/a
9	JUN	chr3:24142448-24142782	HepG2	liver:	n/a	chr3:24142618-24142631
10	CEBPB	chr3:24142460-24142788	K562	blood:	n/a	chr3:24142621-24142632
11	ATF3	chr3:24142459-24142758	K562	blood:	n/a	n/a
12	CEBPB	chr3:24142344-24142805	HepG2	liver:	n/a	chr3:24142621-24142632

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24141927..24144068-chr3:24144999..24146572,2	K562	blood:
2	chr3:24142494..24143999-chr3:24147403..24150339,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-THRB-1	chr3:24141465-24143037	XLOC_003068
2	lnc-THRB-1	chr3:24141466-24143035	XLOC_003068
3	lnc-THRB-1	chr3:24141485-24143037	XLOC_003068
4	lnc-THRB-1	chr3:24141465-24143037	ENSG00000224074.2
5	lnc-THRB-1	chr3:24141932-24143037	ENSG00000224074.2
6	lnc-THRB-1	chr3:24141932-24143037	NONHSAT088693

Variant related genes	Relation type
NPM1P23	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11705746	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11709111	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11709760	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11714770	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714787	0.94[EUR][1000 genomes]
rs11718240	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11721182	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014081	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17014136	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063481	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2089848	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2278802	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28503241	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28702740	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769645	0.86[ASN][1000 genomes]
rs6782978	0.83[EUR][1000 genomes]
rs73822696	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7609948	0.86[ASN][1000 genomes]
rs7645692	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs949715	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24137800-24142800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:24139000-24142800	Weak transcription	HSMMtube	muscle
3	chr3:24141600-24144000	Enhancers	Fetal Stomach	stomach
4	chr3:24141800-24144000	Enhancers	Fetal Lung	lung
5	chr3:24141800-24144000	Enhancers	Stomach Smooth Muscle	stomach
6	chr3:24142000-24143200	Enhancers	Fetal Muscle Leg	muscle
7	chr3:24142000-24143600	Enhancers	NHLF	lung
8	chr3:24142000-24144000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:24142000-24144400	Enhancers	NHDF-Ad	bronchial
10	chr3:24142200-24143000	Flanking Active TSS	Liver	Liver
11	chr3:24142200-24143000	Flanking Active TSS	A549	lung
12	chr3:24142200-24143200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:24142200-24143200	Flanking Active TSS	HepG2	liver
14	chr3:24142200-24143800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:24142200-24144000	Enhancers	HSMM	muscle
16	chr3:24142400-24143000	Enhancers	Adipose Nuclei	Adipose
17	chr3:24142400-24144000	Enhancers	Hela-S3	cervix
18	chr3:24142600-24143000	Enhancers	Right Atrium	heart

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