Variant report

Variant	rs73832372
Chromosome Location	chr4:99548762-99548763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99547655..99549957-chr4:99555367..99557808,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34879386	0.89[ASN][1000 genomes]
rs57333661	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908162	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594940	chr4:99542475-99573350	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99535600-99554200	Enhancers	Brain Substantia Nigra	brain
2	chr4:99543400-99549400	Enhancers	Brain Hippocampus Middle	brain
3	chr4:99543400-99550000	Enhancers	Brain Cingulate Gyrus	brain
4	chr4:99543800-99550000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:99544000-99550000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:99544000-99552400	Weak transcription	Thymus	Thymus
7	chr4:99544400-99551200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:99544800-99549000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:99544800-99550000	Enhancers	NH-A	brain
10	chr4:99545000-99549000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:99545000-99550000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:99546000-99549200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:99546000-99549400	Enhancers	Fetal Heart	heart
14	chr4:99546200-99550000	Enhancers	Ovary	ovary
15	chr4:99546400-99549400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr4:99546400-99550000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:99546400-99554200	Enhancers	Brain Angular Gyrus	brain
18	chr4:99546600-99549000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:99546600-99549200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:99546600-99549400	Enhancers	Colon Smooth Muscle	Colon
21	chr4:99546600-99549800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr4:99546600-99550000	Enhancers	Brain Anterior Caudate	brain
23	chr4:99546600-99554000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:99546600-99560000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr4:99546800-99549200	Enhancers	Fetal Brain Female	brain
26	chr4:99546800-99549400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr4:99546800-99549400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr4:99546800-99559800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:99547000-99549200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr4:99547200-99549200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:99547200-99549200	Enhancers	A549	lung
32	chr4:99547200-99549400	Enhancers	Rectal Smooth Muscle	rectum
33	chr4:99547200-99554400	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr4:99547400-99549600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr4:99547600-99548800	Enhancers	NHDF-Ad	bronchial
36	chr4:99547600-99549000	Enhancers	NHLF	lung
37	chr4:99547600-99549800	Enhancers	Fetal Brain Male	brain
38	chr4:99547800-99549000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:99547800-99549200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr4:99547800-99549600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:99547800-99549800	Enhancers	Brain Germinal Matrix	brain
42	chr4:99547800-99552400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:99547800-99552600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:99547800-99559200	Weak transcription	Stomach Mucosa	stomach
45	chr4:99548000-99549000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr4:99548000-99549000	Weak transcription	Aorta	Aorta
47	chr4:99548000-99549200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:99548000-99549200	Enhancers	Fetal Lung	lung
49	chr4:99548000-99549600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:99548000-99549600	Enhancers	HMEC	breast

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