Variant report

Variant	rs73833661
Chromosome Location	chr3:46913174-46913175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46819637..46822469-chr3:46912934..46914923,2	K562	blood:
2	chr3:46908049..46912169-chr3:46912978..46916098,5	K562	blood:
3	chr3:46899974..46902852-chr3:46912143..46913911,3	K562	blood:
4	chr3:46912131..46913908-chr3:46921481..46923011,2	K562	blood:

Variant related genes	Relation type
ENSG00000160801	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17079248	1.00[AMR][1000 genomes]
rs59608805	1.00[AMR][1000 genomes]
rs72895218	1.00[AMR][1000 genomes]
rs73831404	1.00[AMR][1000 genomes]
rs73831407	1.00[AMR][1000 genomes]
rs73833639	1.00[AMR][1000 genomes]
rs73833643	1.00[AMR][1000 genomes]
rs866977	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007449	chr3:46652343-46986578	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv536554	chr3:46652343-46986578	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv2757869	chr3:46680452-46972489	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv2759147	chr3:46680452-46972489	Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv536558	chr3:46706571-47024756	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv915922	chr3:46768104-47009805	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv590205	chr3:46852679-46929546	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1003979	chr3:46853374-46943854	Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv590206	chr3:46873957-46935527	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv876752	chr3:46879831-46967040	Bivalent/Poised TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv876753	chr3:46884552-46957298	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv876754	chr3:46884552-46967040	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv876755	chr3:46895109-47061183	Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
14	nsv590207	chr3:46903361-46919379	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46906800-46920000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:46908400-46913200	Enhancers	Liver	Liver
3	chr3:46908800-46914000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:46909600-46913400	Weak transcription	Aorta	Aorta
5	chr3:46909600-46917000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr3:46909800-46913400	Weak transcription	Brain Anterior Caudate	brain
7	chr3:46909800-46914600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr3:46910000-46916400	Weak transcription	Brain Substantia Nigra	brain
9	chr3:46910000-46916400	Weak transcription	Psoas Muscle	Psoas
10	chr3:46910000-46916800	Weak transcription	Brain Angular Gyrus	brain
11	chr3:46910200-46916800	Weak transcription	Esophagus	oesophagus
12	chr3:46910400-46914200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:46910400-46915200	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:46910600-46915600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:46910600-46916600	Enhancers	Right Atrium	heart
16	chr3:46910600-46918400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:46911000-46913600	Enhancers	Pancreas	Pancrea
18	chr3:46911000-46917200	Enhancers	Right Ventricle	heart
19	chr3:46911200-46914000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:46911200-46914400	Weak transcription	Fetal Kidney	kidney
21	chr3:46911400-46915200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:46912200-46913400	Weak transcription	Left Ventricle	heart
23	chr3:46912200-46916600	Enhancers	Placenta	Placenta
24	chr3:46912200-46921000	Enhancers	Fetal Heart	heart
25	chr3:46912400-46916600	Enhancers	Fetal Lung	lung
26	chr3:46912600-46913600	Enhancers	Stomach Smooth Muscle	stomach
27	chr3:46912600-46914000	Enhancers	Adipose Nuclei	Adipose
28	chr3:46912600-46915000	Enhancers	Spleen	Spleen
29	chr3:46912600-46916800	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr3:46912600-46917000	Enhancers	Ovary	ovary
31	chr3:46912600-46918600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr3:46912800-46914800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:46913000-46913200	Bivalent Enhancer	NH-A	brain
34	chr3:46913000-46916200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
35	chr3:46913000-46916800	Enhancers	Lung	lung

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