Variant report

Variant	rs866977
Chromosome Location	chr3:46671577-46671578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:46634709..46635296-chr3:46671423..46672075,2	MCF-7	breast:
2	chr3:46551542..46553996-chr3:46670081..46671656,2	K562	blood:
3	chr3:46529884..46530839-chr3:46671105..46672532,19	MCF-7	breast:
4	chr3:46671153..46671844-chr3:46736764..46737267,2	MCF-7	breast:
5	chr3:46670811..46674020-chr3:46675061..46678300,4	K562	blood:
6	chr3:46670790..46673610-chr3:46733778..46736108,3	MCF-7	breast:
7	chr3:46634620..46635722-chr3:46671175..46672074,5	MCF-7	breast:
8	chr3:46670110..46673240-chr3:46702336..46706371,4	MCF-7	breast:
9	chr3:46529871..46530872-chr3:46670590..46672462,23	K562	blood:
10	chr3:46503615..46504280-chr3:46671186..46672162,2	MCF-7	breast:
11	chr3:46650761..46651345-chr3:46671138..46672058,2	MCF-7	breast:
12	chr3:46436315..46436954-chr3:46671328..46672082,2	K562	blood:
13	chr3:46503439..46504291-chr3:46671319..46672034,3	K562	blood:
14	chr3:46671186..46671992-chr3:46701370..46702228,2	MCF-7	breast:
15	chr3:46599516..46600466-chr3:46671185..46672080,3	MCF-7	breast:
16	chr3:46529878..46530429-chr3:46671116..46672037,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178038	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17079248	1.00[AMR][1000 genomes]
rs1915179	1.00[AMR][1000 genomes]
rs2385856	1.00[AMR][1000 genomes]
rs59608805	1.00[AMR][1000 genomes]
rs72895218	1.00[AMR][1000 genomes]
rs73833639	1.00[AMR][1000 genomes]
rs73833643	1.00[AMR][1000 genomes]
rs73833661	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876738	chr3:46639048-46680063	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007449	chr3:46652343-46986578	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv536554	chr3:46652343-46986578	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv876739	chr3:46656980-46744966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv876740	chr3:46656980-46748453	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv876741	chr3:46663372-46763839	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46668000-46672400	Enhancers	Placenta	Placenta
2	chr3:46668800-46672200	Enhancers	Spleen	Spleen
3	chr3:46669800-46671800	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr3:46670000-46672000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:46670000-46672600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:46670200-46672000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:46670200-46672000	Enhancers	Fetal Brain Male	brain
8	chr3:46670200-46672000	Enhancers	Stomach Mucosa	stomach
9	chr3:46670200-46672200	Enhancers	Fetal Intestine Large	intestine
10	chr3:46670400-46671800	Enhancers	HSMMtube	muscle
11	chr3:46670600-46671600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr3:46670600-46671600	Flanking Active TSS	Brain Substantia Nigra	brain
13	chr3:46670600-46671800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr3:46670600-46672000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:46670600-46672000	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr3:46670600-46672000	Enhancers	Liver	Liver
17	chr3:46670600-46672200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:46670600-46672200	Enhancers	Lung	lung
19	chr3:46670800-46671600	Enhancers	Right Ventricle	heart
20	chr3:46670800-46672000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr3:46670800-46672000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:46670800-46672000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr3:46670800-46672000	Flanking Active TSS	Fetal Muscle Leg	muscle
24	chr3:46671000-46671600	Active TSS	Brain Cingulate Gyrus	brain
25	chr3:46671000-46671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:46671000-46671800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
27	chr3:46671000-46671800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:46671000-46672000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr3:46671000-46672000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:46671200-46671600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr3:46671200-46671600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
32	chr3:46671200-46671600	Active TSS	H9 Cell Line	embryonic stem cell
33	chr3:46671200-46671600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:46671200-46671600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:46671200-46671600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr3:46671200-46671600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr3:46671200-46671600	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr3:46671200-46671600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr3:46671200-46671600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:46671200-46671600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
41	chr3:46671200-46671600	Flanking Active TSS	Primary B cells from peripheral blood	blood
42	chr3:46671200-46671600	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr3:46671200-46671600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:46671200-46671600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr3:46671200-46671600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr3:46671200-46671600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:46671200-46671600	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr3:46671200-46671600	Flanking Active TSS	Esophagus	oesophagus
49	chr3:46671200-46671600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr3:46671200-46671600	Active TSS	Pancreatic Islets	Pancreatic Islet

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