Variant report

Variant	rs73833758
Chromosome Location	chr4:102340395-102340396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr4:102340253-102340893	GM12878	blood:	n/a	chr4:102340518-102340527
2	NFIC	chr4:102340273-102340917	GM12878	blood:	n/a	n/a
3	FOXM1	chr4:102340332-102340969	GM12878	blood:	n/a	n/a
4	RCOR1	chr4:102340349-102340803	GM12878	blood:	n/a	n/a
5	STAT5A	chr4:102340390-102340851	GM12878	blood:	n/a	chr4:102340465-102340472
6	TBL1XR1	chr4:102340360-102340969	GM12878	blood:	n/a	n/a
7	FOXM1	chr4:102340377-102340899	GM12878	blood:	n/a	n/a
8	FOS	chr4:102340391-102340843	HUVEC	blood vessel:	n/a	chr4:102340519-102340527 chr4:102340520-102340527 chr4:102340518-102340528 chr4:102340610-102340621 chr4:102340519-102340527 chr4:102340517-102340528
9	RUNX3	chr4:102340338-102340914	GM12878	blood:	n/a	n/a
10	BCLAF1	chr4:102340390-102340904	GM12878	blood:	n/a	chr4:102340518-102340527

Variant related genes	Relation type
BANK1	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11930444	1.00[EUR][1000 genomes]
rs28561698	1.00[EUR][1000 genomes]
rs55727851	1.00[AMR][1000 genomes]
rs56238317	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56412215	1.00[EUR][1000 genomes]
rs56930893	1.00[EUR][1000 genomes]
rs57420194	1.00[AMR][1000 genomes]
rs57651834	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57899609	0.91[AFR][1000 genomes]
rs59009658	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59795398	1.00[AMR][1000 genomes]
rs6842043	1.00[AMR][1000 genomes]
rs73833771	1.00[AMR][1000 genomes]
rs73835910	1.00[AMR][1000 genomes]
rs73835950	1.00[AMR][1000 genomes]
rs73836450	1.00[AMR][1000 genomes]
rs73836463	1.00[AMR][1000 genomes]
rs7654049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7680165	1.00[AMR][1000 genomes]
rs7684458	1.00[EUR][1000 genomes]
rs7699757	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1009302	chr4:102335072-102410893	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102336400-102341600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:102336800-102340400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:102336800-102341400	Weak transcription	Adipose Nuclei	Adipose
4	chr4:102337600-102340600	Enhancers	Dnd41	blood
5	chr4:102337800-102341400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr4:102337800-102341600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:102338000-102342400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:102338200-102341800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:102338400-102340800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:102338400-102341600	Enhancers	Primary B cells from peripheral blood	blood
11	chr4:102338400-102341600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr4:102338400-102341800	Enhancers	Primary hematopoietic stem cells	blood
13	chr4:102338600-102340400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr4:102338600-102341200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr4:102338800-102341400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr4:102339200-102341000	Flanking Active TSS	GM12878-XiMat	blood
17	chr4:102339200-102341200	Enhancers	Primary B cells from cord blood	blood
18	chr4:102339200-102341200	Enhancers	Thymus	Thymus
19	chr4:102339200-102341400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:102339400-102340400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:102339400-102341200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr4:102339400-102341200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr4:102339400-102341800	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr4:102339600-102340800	Enhancers	Duodenum Mucosa	Duodenum
25	chr4:102339600-102341200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:102339600-102341400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr4:102339600-102341400	Enhancers	HUVEC	blood vessel
28	chr4:102339600-102342200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:102339800-102340400	Bivalent Enhancer	Fetal Thymus	thymus
30	chr4:102339800-102341000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr4:102340000-102341000	Enhancers	Primary T cells from cord blood	blood
32	chr4:102340000-102341400	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr4:102340200-102341600	Enhancers	HUES64 Cell Line	embryonic stem cell

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