Variant report

Variant	rs7654049
Chromosome Location	chr4:102336415-102336416
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11930444	1.00[EUR][1000 genomes]
rs28561698	1.00[EUR][1000 genomes]
rs55727851	1.00[AMR][1000 genomes]
rs56238317	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56412215	1.00[EUR][1000 genomes]
rs56930893	1.00[EUR][1000 genomes]
rs57420194	1.00[AMR][1000 genomes]
rs57651834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59009658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59795398	1.00[AMR][1000 genomes]
rs6842043	1.00[AMR][1000 genomes]
rs73833758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833771	1.00[AMR][1000 genomes]
rs73835910	1.00[AMR][1000 genomes]
rs73835950	1.00[AMR][1000 genomes]
rs73836450	1.00[AMR][1000 genomes]
rs73836463	1.00[AMR][1000 genomes]
rs7680165	1.00[AMR][1000 genomes]
rs7684458	1.00[EUR][1000 genomes]
rs7699757	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1009302	chr4:102335072-102410893	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102335200-102337200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:102335800-102337800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr4:102336200-102336800	Enhancers	Primary T cells from cord blood	blood
4	chr4:102336200-102337800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr4:102336400-102336600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr4:102336400-102336600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr4:102336400-102337600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr4:102336400-102339600	Weak transcription	HUVEC	blood vessel
9	chr4:102336400-102340200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:102336400-102341600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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