Variant report

Variant	rs73834002
Chromosome Location	chr3:51306940-51306941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51306657..51307222-chr3:51348509..51349326,2	MCF-7	breast:
2	chr3:51306865..51307450-chr3:51409155..51410064,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1383252	0.88[AFR][1000 genomes]
rs1480358	0.88[AFR][1000 genomes]
rs1480363	0.88[AFR][1000 genomes]
rs1480365	0.88[AFR][1000 genomes]
rs1552072	0.88[AFR][1000 genomes]
rs1552073	0.88[AFR][1000 genomes]
rs1904786	0.88[AFR][1000 genomes]
rs2061951	0.88[AFR][1000 genomes]
rs2355941	0.88[AFR][1000 genomes]
rs2355942	0.88[AFR][1000 genomes]
rs2883811	0.83[AFR][1000 genomes]
rs34035394	0.83[AFR][1000 genomes]
rs34251985	0.88[AFR][1000 genomes]
rs4974093	0.88[AFR][1000 genomes]
rs4974097	0.88[AFR][1000 genomes]
rs4974109	0.83[AFR][1000 genomes]
rs55700670	1.00[AMR][1000 genomes]
rs60866608	1.00[AMR][1000 genomes]
rs6800805	0.88[AFR][1000 genomes]
rs73833971	1.00[AMR][1000 genomes]
rs73833999	1.00[AMR][1000 genomes]
rs73837441	1.00[AMR][1000 genomes]
rs7634514	0.88[AFR][1000 genomes]
rs922612	0.88[AFR][1000 genomes]
rs9825454	0.83[AFR][1000 genomes]
rs9855442	0.88[AFR][1000 genomes]
rs9855454	0.88[AFR][1000 genomes]
rs9878100	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51252000-51312600	Weak transcription	HSMMtube	muscle
2	chr3:51253400-51312200	Weak transcription	Brain Substantia Nigra	brain
3	chr3:51285400-51308200	Weak transcription	Brain Anterior Caudate	brain
4	chr3:51288200-51319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:51295600-51310800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:51296400-51318800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:51297000-51317400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:51298000-51314400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:51298000-51320800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:51298400-51319000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:51299400-51307200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:51299400-51307800	Weak transcription	Fetal Brain Female	brain
13	chr3:51299600-51307000	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:51299600-51320800	Weak transcription	Brain Germinal Matrix	brain
15	chr3:51299800-51307800	Weak transcription	Brain Angular Gyrus	brain
16	chr3:51303600-51312200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:51304400-51317400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:51305000-51318800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:51306000-51307800	Enhancers	Primary T cells from cord blood	blood
20	chr3:51306200-51307200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr3:51306200-51308000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr3:51306200-51308200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:51306200-51308200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr3:51306600-51307000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr3:51306800-51308000	Enhancers	Primary T helper cells fromperipheralblood	blood

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