Variant report

Variant	rs73833999
Chromosome Location	chr3:51255043-51255044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10212250	0.88[AFR][1000 genomes]
rs11130273	0.81[AFR][1000 genomes]
rs11130274	0.94[AFR][1000 genomes]
rs11130282	0.88[AFR][1000 genomes]
rs11712871	0.88[AFR][1000 genomes]
rs11919932	0.81[AFR][1000 genomes]
rs2355934	0.88[AFR][1000 genomes]
rs28470684	0.81[AFR][1000 genomes]
rs28670710	0.88[AFR][1000 genomes]
rs4130474	0.88[AFR][1000 genomes]
rs4244697	0.88[AFR][1000 genomes]
rs4244699	0.81[AFR][1000 genomes]
rs4244700	0.81[AFR][1000 genomes]
rs4244701	0.81[AFR][1000 genomes]
rs4244702	0.81[AFR][1000 genomes]
rs4244703	0.81[AFR][1000 genomes]
rs4244704	0.81[AFR][1000 genomes]
rs4263323	0.81[AFR][1000 genomes]
rs4267674	0.88[AFR][1000 genomes]
rs4269109	0.83[AFR][1000 genomes]
rs4286453	0.94[AFR][1000 genomes]
rs4293735	0.94[AFR][1000 genomes]
rs4301044	0.88[AFR][1000 genomes]
rs4308313	0.88[AFR][1000 genomes]
rs4309762	0.94[AFR][1000 genomes]
rs4309763	0.94[AFR][1000 genomes]
rs4317135	0.94[AFR][1000 genomes]
rs4328835	0.94[AFR][1000 genomes]
rs4340738	0.88[AFR][1000 genomes]
rs4359843	0.94[AFR][1000 genomes]
rs4367101	0.88[AFR][1000 genomes]
rs4377512	0.81[AFR][1000 genomes]
rs4378999	0.88[AFR][1000 genomes]
rs4390967	0.94[AFR][1000 genomes]
rs4438692	0.81[AFR][1000 genomes]
rs4444745	0.94[AFR][1000 genomes]
rs4446244	0.81[AFR][1000 genomes]
rs4453876	0.88[AFR][1000 genomes]
rs4464493	0.94[AFR][1000 genomes]
rs4465974	0.94[AFR][1000 genomes]
rs4478114	0.94[AFR][1000 genomes]
rs4487270	0.94[AFR][1000 genomes]
rs4505743	0.81[AFR][1000 genomes]
rs4507294	0.81[AFR][1000 genomes]
rs4511933	0.81[AFR][1000 genomes]
rs4528983	0.88[AFR][1000 genomes]
rs4530566	0.81[AFR][1000 genomes]
rs4532165	0.94[AFR][1000 genomes]
rs4541436	0.81[AFR][1000 genomes]
rs4549311	0.88[AFR][1000 genomes]
rs4568176	0.88[AFR][1000 genomes]
rs4568177	0.88[AFR][1000 genomes]
rs4574329	0.81[AFR][1000 genomes]
rs4582086	0.81[AFR][1000 genomes]
rs4589968	0.94[AFR][1000 genomes]
rs4615113	0.81[AFR][1000 genomes]
rs4927958	0.88[AFR][1000 genomes]
rs4927960	0.81[AFR][1000 genomes]
rs4927964	0.94[AFR][1000 genomes]
rs4927965	0.94[AFR][1000 genomes]
rs4927967	0.94[AFR][1000 genomes]
rs4927976	0.81[AFR][1000 genomes]
rs4927977	0.81[AFR][1000 genomes]
rs4927978	0.94[AFR][1000 genomes]
rs4927979	0.83[AFR][1000 genomes]
rs4927980	0.94[AFR][1000 genomes]
rs4927982	0.94[AFR][1000 genomes]
rs4927983	0.94[AFR][1000 genomes]
rs4927984	0.94[AFR][1000 genomes]
rs55700670	1.00[AMR][1000 genomes]
rs60866608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6445393	0.94[AFR][1000 genomes]
rs6445455	0.94[AFR][1000 genomes]
rs6445551	0.88[AFR][1000 genomes]
rs6445600	0.81[AFR][1000 genomes]
rs6445717	0.81[AFR][1000 genomes]
rs6445750	0.81[AFR][1000 genomes]
rs6445779	0.81[AFR][1000 genomes]
rs6446011	0.94[AFR][1000 genomes]
rs6446118	0.94[AFR][1000 genomes]
rs6446167	0.94[AFR][1000 genomes]
rs6763136	0.88[AFR][1000 genomes]
rs6767329	0.94[AFR][1000 genomes]
rs6768601	0.81[AFR][1000 genomes]
rs6769957	0.94[AFR][1000 genomes]
rs6772664	0.88[AFR][1000 genomes]
rs6775483	0.94[AFR][1000 genomes]
rs6777719	0.94[AFR][1000 genomes]
rs6779658	0.88[AFR][1000 genomes]
rs6787773	0.81[AFR][1000 genomes]
rs6793613	0.94[AFR][1000 genomes]
rs6793648	0.88[AFR][1000 genomes]
rs6797368	0.88[AFR][1000 genomes]
rs6799211	0.94[AFR][1000 genomes]
rs6803672	0.88[AFR][1000 genomes]
rs6806090	0.94[AFR][1000 genomes]
rs6808206	0.81[AFR][1000 genomes]
rs6809080	0.88[AFR][1000 genomes]
rs6809524	0.94[AFR][1000 genomes]
rs73833971	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834002	1.00[AMR][1000 genomes]
rs73837441	1.00[AMR][1000 genomes]
rs7610901	0.81[AFR][1000 genomes]
rs7611873	0.81[AFR][1000 genomes]
rs7615291	0.94[AFR][1000 genomes]
rs7619584	0.88[AFR][1000 genomes]
rs7628533	0.88[AFR][1000 genomes]
rs7629433	0.94[AFR][1000 genomes]
rs7630616	0.94[AFR][1000 genomes]
rs7630730	0.94[AFR][1000 genomes]
rs7639161	0.94[AFR][1000 genomes]
rs7640263	0.94[AFR][1000 genomes]
rs7644957	0.88[AFR][1000 genomes]
rs7652655	0.94[AFR][1000 genomes]
rs7652818	0.94[AFR][1000 genomes]
rs7653451	0.81[AFR][1000 genomes]
rs7653539	0.81[AFR][1000 genomes]
rs9284887	0.81[AFR][1000 genomes]
rs9284888	0.81[AFR][1000 genomes]
rs9713241	0.81[AFR][1000 genomes]
rs9828200	0.94[AFR][1000 genomes]
rs9839860	0.94[AFR][1000 genomes]
rs9841339	0.94[AFR][1000 genomes]
rs9850021	0.81[AFR][1000 genomes]
rs9857727	0.81[AFR][1000 genomes]
rs9858412	0.88[AFR][1000 genomes]
rs9864574	0.88[AFR][1000 genomes]
rs9869123	0.88[AFR][1000 genomes]
rs9871539	0.94[AFR][1000 genomes]
rs9883739	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51234600-51262800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:51235800-51285000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:51236600-51265000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:51248000-51259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:51248000-51282600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:51248200-51259200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:51248200-51265600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:51249600-51259600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:51249800-51259600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:51250400-51256200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:51251600-51264800	Weak transcription	Brain Germinal Matrix	brain
12	chr3:51252000-51288200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:51252000-51312600	Weak transcription	HSMMtube	muscle
14	chr3:51252600-51259400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:51252800-51256400	Strong transcription	Brain Cingulate Gyrus	brain
16	chr3:51252800-51277000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:51253200-51259000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:51253400-51259000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:51253400-51274000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:51253400-51312200	Weak transcription	Brain Substantia Nigra	brain
21	chr3:51254200-51262800	Weak transcription	Fetal Brain Female	brain
22	chr3:51254400-51256400	Weak transcription	Brain Anterior Caudate	brain
23	chr3:51254400-51257000	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:51254800-51256200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:51255000-51276200	Weak transcription	Fetal Brain Male	brain

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