Variant report

Variant	rs73834528
Chromosome Location	chr4:102898172-102898173
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr4:102898077-102898814	ECC-1	luminal epithelium:	n/a	n/a
2	GTF2F1	chr4:102898136-102898629	Hela-S3	cervix:	n/a	n/a
3	SP1	chr4:102898050-102898801	A549	lung:	n/a	chr4:102898697-102898718
4	FOSL1	chr4:102898072-102898703	HCT-116	colon:	n/a	n/a
5	FOSL2	chr4:102898171-102898630	A549	lung:	n/a	n/a
6	TCF12	chr4:102898145-102898713	ECC-1	luminal epithelium:	n/a	n/a
7	PBX3	chr4:102898080-102898741	SK-N-SH	brain:	n/a	n/a
8	EP300	chr4:102898168-102898745	Hela-S3	cervix:	n/a	n/a
9	BRCA1	chr4:102897789-102898772	Hela-S3	cervix:	n/a	n/a
10	SP1	chr4:102898059-102898786	HCT-116	colon:	n/a	chr4:102898697-102898718
11	MYC	chr4:102898115-102898881	A549	lung:	n/a	n/a
12	FOSL2	chr4:102898171-102898688	SK-N-SH	brain:	n/a	n/a
13	CEBPB	chr4:102898157-102898779	HCT-116	colon:	n/a	n/a
14	TCF12	chr4:102898038-102898913	A549	lung:	n/a	n/a
15	FOSL2	chr4:102898001-102899075	SK-N-SH	brain:	n/a	chr4:102899021-102899029 chr4:102898907-102898917 chr4:102898907-102898917 chr4:102898908-102898917 chr4:102898907-102898917 chr4:102898907-102898917
16	TCF12	chr4:102897888-102899039	SK-N-SH	brain:	n/a	n/a
17	MAX	chr4:102898080-102898857	A549	lung:	n/a	n/a
18	MAFK	chr4:102898035-102898534	IMR90	lung:	n/a	n/a
19	CEBPB	chr4:102898018-102898966	Hela-S3	cervix:	n/a	n/a
20	RCOR1	chr4:102898149-102898781	Hela-S3	cervix:	n/a	n/a
21	FOSL1	chr4:102898127-102898750	HCT-116	colon:	n/a	n/a
22	MAX	chr4:102898071-102898783	HCT-116	colon:	n/a	n/a
23	TEAD4	chr4:102898118-102898730	SK-N-SH	brain:	n/a	n/a
24	POLR2A	chr4:102898139-102898649	SK-N-SH	brain:	n/a	n/a
25	EP300	chr4:102898072-102898925	A549	lung:	n/a	chr4:102898907-102898916
26	EP300	chr4:102897997-102898903	A549	lung:	n/a	n/a
27	POLR2A	chr4:102898145-102898628	HUVEC	blood vessel:	n/a	n/a
28	SP1	chr4:102898104-102898892	A549	lung:	n/a	chr4:102898697-102898718
29	SRF	chr4:102898139-102898826	HCT-116	colon:	n/a	n/a
30	STAT3	chr4:102898106-102898656	MCF10A-Er-Src	breast:	n/a	n/a
31	MYC	chr4:102898127-102898893	MCF10A-Er-Src	breast:	n/a	n/a
32	CBX3	chr4:102898123-102898750	HCT-116	colon:	n/a	n/a
33	SIN3AK20	chr4:102898172-102898762	HCT-116	colon:	n/a	n/a
34	PBX3	chr4:102897996-102898821	SK-N-SH	brain:	n/a	n/a
35	CEBPB	chr4:102898141-102898612	IMR90	lung:	n/a	n/a
36	RAD21	chr4:102898134-102898763	HCT-116	colon:	n/a	n/a
37	RAD21	chr4:102898115-102898647	A549	lung:	n/a	n/a
38	POLR2A	chr4:102898161-102898520	MCF10A-Er-Src	breast:	n/a	n/a
39	JUND	chr4:102898029-102898736	SK-N-SH	brain:	n/a	n/a
40	NFIC	chr4:102898126-102898842	ECC-1	luminal epithelium:	n/a	n/a
41	JUND	chr4:102898079-102898852	SK-N-SH	brain:	n/a	n/a
42	JUND	chr4:102898112-102898781	HCT-116	colon:	n/a	n/a
43	ZBTB33	chr4:102898141-102898705	SK-N-SH	brain:	n/a	n/a
44	ZKSCAN1	chr4:102898129-102898569	Hela-S3	cervix:	n/a	n/a
45	CEBPB	chr4:102898166-102898663	A549	lung:	n/a	n/a
46	FOXA2	chr4:102898159-102898680	A549	lung:	n/a	n/a
47	RAD21	chr4:102898160-102898672	Hela-S3	cervix:	n/a	n/a
48	JUND	chr4:102898111-102898791	HCT-116	colon:	n/a	n/a
49	JUND	chr4:102898067-102899091	SK-N-SH	brain:	n/a	chr4:102899021-102899029 chr4:102898907-102898917 chr4:102898907-102898917 chr4:102898908-102898917 chr4:102898907-102898917 chr4:102898907-102898917
50	CEBPB	chr4:102898001-102898881	A549	lung:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC39A8-2	chr4:102898051-102898257	ENSG00000251309.1

Variant related genes	Relation type
BANK1	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73834529	1.00[AFR][1000 genomes]
rs73834532	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2757074	chr4:102772861-102933949	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102894000-102905200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:102894200-102900600	Strong transcription	Primary B cells from peripheral blood	blood
3	chr4:102894800-102898200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:102896400-102898600	Enhancers	A549	lung
5	chr4:102896600-102898800	Strong transcription	Primary B cells from cord blood	blood
6	chr4:102896600-102899200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:102896600-102899800	Enhancers	Hela-S3	cervix
8	chr4:102897200-102898600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:102897200-102899200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:102897600-102899000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:102897600-102899200	Enhancers	HUVEC	blood vessel
12	chr4:102897800-102898800	Enhancers	HSMM	muscle
13	chr4:102897800-102899000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:102897800-102899000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:102897800-102899000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:102897800-102899000	Enhancers	NH-A	brain
17	chr4:102897800-102899000	Enhancers	NHEK	skin
18	chr4:102897800-102899000	Enhancers	Osteobl	bone
19	chr4:102898000-102898400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:102898000-102898600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:102898000-102898800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:102898000-102898800	Enhancers	HMEC	breast
23	chr4:102898000-102898800	Enhancers	NHDF-Ad	bronchial

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