Variant report

Variant	rs73834842
Chromosome Location	chr3:68185049-68185050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4856930	1.00[AMR][1000 genomes]
rs55812937	1.00[AMR][1000 genomes]
rs55942371	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57244751	1.00[AMR][1000 genomes]
rs6798427	1.00[AMR][1000 genomes]
rs73834834	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834840	1.00[AMR][1000 genomes]
rs73834849	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834856	1.00[AMR][1000 genomes]
rs73834858	1.00[AMR][1000 genomes]
rs73834860	1.00[AMR][1000 genomes]
rs73834867	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7428031	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999747	chr3:68066423-68188180	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536584	chr3:68066423-68188180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv876925	chr3:68180422-68288626	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68180800-68185400	Weak transcription	Fetal Brain Female	brain
2	chr3:68183800-68186000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:68183800-68186000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:68184000-68186000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:68184000-68186000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:68184000-68186200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:68184200-68186200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:68184400-68186000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:68184600-68185400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:68184600-68185600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:68184800-68185800	Enhancers	Fetal Brain Male	brain
12	chr3:68185000-68185400	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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