Variant report

Variant	rs73834849
Chromosome Location	chr3:68192164-68192165
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4856930	1.00[AMR][1000 genomes]
rs55812937	1.00[AMR][1000 genomes]
rs55942371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57244751	1.00[AMR][1000 genomes]
rs6798427	1.00[AMR][1000 genomes]
rs73834834	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834840	1.00[AMR][1000 genomes]
rs73834842	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834856	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834858	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834860	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834867	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7428031	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv876925	chr3:68180422-68288626	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68190200-68193600	Enhancers	Fetal Brain Male	brain
2	chr3:68190800-68192800	Enhancers	Brain Germinal Matrix	brain
3	chr3:68190800-68193400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:68191600-68192600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:68191800-68192200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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