Variant report

Variant	rs73835946
Chromosome Location	chr4:102277019-102277020
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102276355..102278194-chr4:102281593..102284291,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56144106	1.00[AMR][1000 genomes]
rs56412215	1.00[AMR][1000 genomes]
rs56930893	0.85[AMR][1000 genomes]
rs57479279	1.00[AMR][1000 genomes]
rs60815298	0.85[AMR][1000 genomes]
rs6858574	1.00[AMR][1000 genomes]
rs73833704	1.00[AMR][1000 genomes]
rs73835928	0.85[AMR][1000 genomes]
rs7684458	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102270000-102280800	Weak transcription	Aorta	Aorta
2	chr4:102271600-102277200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:102271600-102277200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:102271800-102277200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:102275400-102277200	Enhancers	NHEK	skin
6	chr4:102275400-102278400	Enhancers	Primary B cells from peripheral blood	blood
7	chr4:102275600-102277200	Enhancers	HMEC	breast
8	chr4:102276000-102277400	Flanking Active TSS	GM12878-XiMat	blood
9	chr4:102276000-102277600	Enhancers	Primary B cells from cord blood	blood
10	chr4:102276200-102277200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:102276200-102277200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:102276200-102277200	Enhancers	HepG2	liver
13	chr4:102276200-102278400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr4:102276200-102279200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:102276600-102277200	Enhancers	NHLF	lung
16	chr4:102276600-102277600	Flanking Active TSS	A549	lung
17	chr4:102276600-102278600	Enhancers	Ovary	ovary
18	chr4:102276600-102279200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:102276800-102277200	Enhancers	Osteobl	bone
20	chr4:102277000-102277200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:102277000-102277200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:102277000-102277200	Enhancers	NH-A	brain
23	chr4:102277000-102277400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:102277000-102277400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:102277000-102277400	Enhancers	Hela-S3	cervix
26	chr4:102277000-102277600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:102277000-102277600	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr4:102277000-102277800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr4:102277000-102277800	Enhancers	NHDF-Ad	bronchial
30	chr4:102277000-102278400	Enhancers	Small Intestine	intestine
31	chr4:102277000-102278400	Enhancers	Stomach Mucosa	stomach
32	chr4:102277000-102279200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr4:102277000-102279200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:102277000-102279200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:102277000-102279200	Enhancers	HSMM	muscle
36	chr4:102277000-102279200	Enhancers	HUVEC	blood vessel

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