Variant report

Variant	rs60815298
Chromosome Location	chr4:102279343-102279344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:102277040..102279542-chr4:102281591..102284231,2	MCF-7	breast:
2	chr4:102269774..102272032-chr4:102277264..102279804,2	K562	blood:
3	chr4:102278096..102281241-chr4:102294142..102296404,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11938557	1.00[EUR][1000 genomes]
rs11946138	1.00[EUR][1000 genomes]
rs1441430	1.00[EUR][1000 genomes]
rs17030994	1.00[EUR][1000 genomes]
rs56144106	0.85[AMR][1000 genomes]
rs56412215	0.85[AMR][1000 genomes]
rs57479279	0.85[AMR][1000 genomes]
rs58053659	1.00[EUR][1000 genomes]
rs59540931	1.00[EUR][1000 genomes]
rs59814763	1.00[EUR][1000 genomes]
rs6532923	1.00[EUR][1000 genomes]
rs6836243	1.00[EUR][1000 genomes]
rs6841711	1.00[EUR][1000 genomes]
rs6858574	0.85[AMR][1000 genomes]
rs73833275	1.00[EUR][1000 genomes]
rs73833302	1.00[EUR][1000 genomes]
rs73833704	0.85[AMR][1000 genomes]
rs73835915	0.83[AMR][1000 genomes]
rs73835928	1.00[AMR][1000 genomes]
rs73835946	0.85[AMR][1000 genomes]
rs7684458	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102270000-102280800	Weak transcription	Aorta	Aorta
2	chr4:102277200-102279400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:102277200-102279400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:102277200-102279400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:102278000-102279400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:102278000-102279400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:102278000-102279600	Enhancers	NH-A	brain
8	chr4:102278000-102279800	Enhancers	Osteobl	bone
9	chr4:102278200-102279400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:102278200-102279400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:102278200-102279400	Enhancers	HepG2	liver
12	chr4:102278200-102279400	Enhancers	NHDF-Ad	bronchial
13	chr4:102278200-102279400	Enhancers	NHEK	skin
14	chr4:102278200-102279800	Enhancers	HMEC	breast
15	chr4:102278400-102279400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:102278400-102279400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:102278400-102279800	Enhancers	NHLF	lung
18	chr4:102278600-102279400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:102278800-102279400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:102279200-102282000	Weak transcription	HSMM	muscle
21	chr4:102279200-102287400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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