Variant report

Variant	rs73833275
Chromosome Location	chr4:102157311-102157312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11936232	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11938557	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11946138	1.00[EUR][1000 genomes]
rs1441430	1.00[EUR][1000 genomes]
rs16996716	1.00[ASN][1000 genomes]
rs17030994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58053659	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58964732	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59540931	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59814763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60815298	1.00[EUR][1000 genomes]
rs6532923	1.00[EUR][1000 genomes]
rs6836243	1.00[EUR][1000 genomes]
rs6841711	1.00[EUR][1000 genomes]
rs73833281	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833302	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102146200-102158800	Weak transcription	Gastric	stomach
2	chr4:102146400-102162000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:102152200-102159800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:102152400-102158800	Weak transcription	Psoas Muscle	Psoas
5	chr4:102152400-102160200	Weak transcription	Aorta	Aorta
6	chr4:102152800-102165600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:102153000-102165600	Weak transcription	Brain Anterior Caudate	brain
8	chr4:102153000-102165600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:102153600-102157400	Weak transcription	Ovary	ovary
10	chr4:102153800-102158000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:102153800-102159000	Weak transcription	Adipose Nuclei	Adipose
12	chr4:102153800-102159000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:102153800-102159000	Weak transcription	NHLF	lung
14	chr4:102153800-102159800	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:102153800-102160000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:102154000-102160200	Weak transcription	HSMM	muscle
17	chr4:102154200-102159000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:102154200-102159600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:102154400-102159000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:102154400-102159000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:102154600-102157400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:102154600-102158400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:102154600-102158800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:102154600-102158800	Weak transcription	Brain Angular Gyrus	brain
25	chr4:102154600-102159000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:102154600-102159600	Weak transcription	HMEC	breast
27	chr4:102154600-102159600	Weak transcription	Osteobl	bone
28	chr4:102154600-102159800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:102154600-102159800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:102154600-102159800	Weak transcription	NHEK	skin
31	chr4:102154800-102158400	Weak transcription	A549	lung
32	chr4:102155000-102158800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:102155200-102160000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr4:102156400-102158000	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr4:102156800-102157800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr4:102157000-102157600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr4:102157200-102157400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:102157200-102157400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:102157200-102157400	Enhancers	Brain Hippocampus Middle	brain
40	chr4:102157200-102157800	Enhancers	Primary B cells from cord blood	blood
41	chr4:102157200-102157800	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr4:102157200-102158000	Enhancers	Primary B cells from peripheral blood	blood

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