Variant report

Variant	rs6841711
Chromosome Location	chr4:102211192-102211193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102206850..102209343-chr4:102209669..102211406,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11938557	1.00[EUR][1000 genomes]
rs11943655	0.87[AFR][1000 genomes]
rs11946138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441430	1.00[EUR][1000 genomes]
rs17030994	1.00[EUR][1000 genomes]
rs58053659	1.00[EUR][1000 genomes]
rs59540931	1.00[EUR][1000 genomes]
rs59814763	1.00[EUR][1000 genomes]
rs60815298	1.00[EUR][1000 genomes]
rs6532923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836243	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73833275	1.00[EUR][1000 genomes]
rs73833302	1.00[EUR][1000 genomes]
rs7655806	0.87[AFR][1000 genomes]
rs7684556	0.94[ASN][1000 genomes]
rs7698954	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102200000-102211800	Weak transcription	HMEC	breast
2	chr4:102200600-102211800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:102201000-102213000	Weak transcription	Fetal Heart	heart
4	chr4:102201200-102218200	Weak transcription	NHEK	skin
5	chr4:102201400-102214200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:102204800-102211200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr4:102205000-102212600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:102207000-102216600	Weak transcription	NH-A	brain
9	chr4:102207200-102212000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:102207400-102212000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:102207400-102212000	Weak transcription	Gastric	stomach
12	chr4:102207400-102214200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:102207400-102214200	Weak transcription	Esophagus	oesophagus
14	chr4:102207600-102211400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:102207600-102226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:102208000-102211200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:102208000-102212400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:102208400-102211200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:102208600-102211200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr4:102208600-102212800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr4:102208600-102212800	Enhancers	Brain Anterior Caudate	brain
22	chr4:102208600-102213200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr4:102208800-102211800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr4:102209200-102211200	Enhancers	Primary B cells from cord blood	blood
25	chr4:102209400-102211400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:102209400-102211800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr4:102209400-102211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:102209400-102212000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:102209400-102212000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:102209400-102214200	Weak transcription	Aorta	Aorta
31	chr4:102209400-102214400	Weak transcription	Right Ventricle	heart
32	chr4:102209800-102212000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:102209800-102212400	Weak transcription	A549	lung
34	chr4:102209800-102214400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:102210000-102211800	Weak transcription	Stomach Mucosa	stomach
36	chr4:102210000-102212600	Enhancers	Primary T cells from cord blood	blood
37	chr4:102210200-102211800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr4:102210200-102211800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr4:102210200-102211800	Weak transcription	Adipose Nuclei	Adipose
40	chr4:102210200-102211800	Weak transcription	Colon Smooth Muscle	Colon
41	chr4:102210200-102211800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr4:102210200-102212000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:102210200-102212000	Weak transcription	Pancreas	Pancrea
44	chr4:102210200-102212200	Weak transcription	Brain Angular Gyrus	brain
45	chr4:102210200-102212800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr4:102210200-102213600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr4:102210200-102214600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr4:102210200-102215600	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr4:102210200-102225800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr4:102210400-102211600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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