Variant report

Variant	rs7655806
Chromosome Location	chr4:102213416-102213417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102211391..102213772-chr4:102219486..102221204,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1011849	0.91[AMR][1000 genomes]
rs11943655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11946103	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11946138	0.87[AFR][1000 genomes]
rs1441431	0.91[AMR][1000 genomes]
rs1441434	1.00[AMR][1000 genomes]
rs1561722	0.82[AMR][1000 genomes]
rs17031168	0.91[AMR][1000 genomes]
rs17031172	0.91[AMR][1000 genomes]
rs17031175	0.91[AMR][1000 genomes]
rs17031176	0.91[AMR][1000 genomes]
rs17031180	0.91[AMR][1000 genomes]
rs17031182	0.91[AMR][1000 genomes]
rs3974659	0.91[AMR][1000 genomes]
rs4488940	1.00[AMR][1000 genomes]
rs4504259	1.00[AMR][1000 genomes]
rs4637408	1.00[AMR][1000 genomes]
rs60438397	0.91[AMR][1000 genomes]
rs60984918	0.91[AMR][1000 genomes]
rs6532923	0.87[AFR][1000 genomes]
rs6532924	0.91[AMR][1000 genomes]
rs6532925	0.91[AMR][1000 genomes]
rs6532926	0.91[AMR][1000 genomes]
rs6812094	0.91[AMR][1000 genomes]
rs6827528	1.00[AMR][1000 genomes]
rs6828025	1.00[AMR][1000 genomes]
rs6830390	1.00[AMR][1000 genomes]
rs6831471	0.91[AMR][1000 genomes]
rs6832020	0.91[AMR][1000 genomes]
rs6834721	1.00[AMR][1000 genomes]
rs6836243	0.86[AFR][1000 genomes]
rs6837858	0.91[AMR][1000 genomes]
rs6841711	0.87[AFR][1000 genomes]
rs6842191	0.91[AMR][1000 genomes]
rs6844844	0.91[AMR][1000 genomes]
rs6846554	0.91[AMR][1000 genomes]
rs6852282	0.91[AMR][1000 genomes]
rs73835916	1.00[AMR][1000 genomes]
rs73835923	1.00[AMR][1000 genomes]
rs73835924	1.00[AMR][1000 genomes]
rs73835931	1.00[AMR][1000 genomes]
rs73835932	0.91[AMR][1000 genomes]
rs73835933	1.00[AMR][1000 genomes]
rs73835934	1.00[AMR][1000 genomes]
rs73835935	0.91[AMR][1000 genomes]
rs73835936	0.91[AMR][1000 genomes]
rs73835937	0.91[AMR][1000 genomes]
rs73835938	0.91[AMR][1000 genomes]
rs73835944	0.82[AMR][1000 genomes]
rs7661895	0.91[AMR][1000 genomes]
rs7664396	0.91[AMR][1000 genomes]
rs7671524	0.82[AMR][1000 genomes]
rs7698954	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102201200-102218200	Weak transcription	NHEK	skin
2	chr4:102201400-102214200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:102207000-102216600	Weak transcription	NH-A	brain
4	chr4:102207400-102214200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:102207400-102214200	Weak transcription	Esophagus	oesophagus
6	chr4:102207600-102226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:102209400-102214200	Weak transcription	Aorta	Aorta
8	chr4:102209400-102214400	Weak transcription	Right Ventricle	heart
9	chr4:102209800-102214400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:102210200-102213600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:102210200-102214600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:102210200-102215600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:102210200-102225800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:102210600-102214200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:102210600-102215800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:102211000-102214200	Enhancers	Ovary	ovary
17	chr4:102211200-102215400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:102211200-102215600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:102211200-102219000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:102211400-102214200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr4:102211600-102213600	Enhancers	Left Ventricle	heart
22	chr4:102211800-102214400	Weak transcription	Primary B cells from cord blood	blood
23	chr4:102212000-102214000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:102212200-102213600	Enhancers	Brain Angular Gyrus	brain
25	chr4:102212200-102220600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr4:102212200-102226200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr4:102212400-102216600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:102212600-102213800	Weak transcription	Osteobl	bone
29	chr4:102212600-102214000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:102212600-102214200	Weak transcription	Psoas Muscle	Psoas
31	chr4:102212600-102227200	Weak transcription	Primary T cells from cord blood	blood
32	chr4:102212800-102214400	Weak transcription	Brain Anterior Caudate	brain
33	chr4:102212800-102215200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr4:102212800-102216800	Weak transcription	Adipose Nuclei	Adipose
35	chr4:102212800-102217400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:102212800-102221000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:102212800-102227200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr4:102212800-102228000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:102213000-102213800	Enhancers	Fetal Heart	heart
40	chr4:102213000-102214200	Weak transcription	Colon Smooth Muscle	Colon
41	chr4:102213000-102214200	Weak transcription	A549	lung
42	chr4:102213000-102214400	Weak transcription	Right Atrium	heart
43	chr4:102213000-102214800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:102213200-102214200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr4:102213200-102214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:102213200-102218000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr4:102213400-102214200	Weak transcription	Pancreas	Pancrea
48	chr4:102213400-102214400	Weak transcription	Gastric	stomach
49	chr4:102213400-102221000	Weak transcription	Stomach Mucosa	stomach

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