Variant report

Variant	rs1441434
Chromosome Location	chr4:102209163-102209164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:102206850..102209343-chr4:102209669..102211406,2	MCF-7	breast:
2	chr4:102208778..102209725-chr4:102317892..102318526,2	MCF-7	breast:
3	chr4:102199385..102202283-chr4:102207975..102210015,2	MCF-7	breast:
4	chr4:102206153..102209881-chr4:102222002..102225867,4	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1011849	0.91[AMR][1000 genomes]
rs11943655	1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[AMR][1000 genomes]
rs11946103	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1441431	0.91[AMR][1000 genomes]
rs1561722	0.82[AMR][1000 genomes]
rs16996716	1.00[MEX][hapmap]
rs17030762	1.00[MEX][hapmap]
rs17030994	1.00[MEX][hapmap]
rs17031168	0.91[AMR][1000 genomes]
rs17031172	0.91[AMR][1000 genomes]
rs17031175	0.91[AMR][1000 genomes]
rs17031176	0.91[AMR][1000 genomes]
rs17031180	0.91[AMR][1000 genomes]
rs17031182	0.91[AMR][1000 genomes]
rs3730250	1.00[MEX][hapmap]
rs3974659	0.91[AMR][1000 genomes]
rs4488940	1.00[AMR][1000 genomes]
rs4504259	1.00[AMR][1000 genomes]
rs4637408	1.00[AMR][1000 genomes]
rs60438397	0.91[AMR][1000 genomes]
rs60984918	0.91[AMR][1000 genomes]
rs6532924	0.91[AMR][1000 genomes]
rs6532925	0.91[AMR][1000 genomes]
rs6532926	0.91[AMR][1000 genomes]
rs6812094	0.91[AMR][1000 genomes]
rs6827528	1.00[AMR][1000 genomes]
rs6828025	1.00[AMR][1000 genomes]
rs6828770	1.00[MEX][hapmap]
rs6830390	1.00[AMR][1000 genomes]
rs6831471	0.91[AMR][1000 genomes]
rs6832020	0.91[AMR][1000 genomes]
rs6834721	1.00[AMR][1000 genomes]
rs6837858	0.91[AMR][1000 genomes]
rs6842191	0.91[AMR][1000 genomes]
rs6844844	0.91[AMR][1000 genomes]
rs6846554	0.91[AMR][1000 genomes]
rs6852282	0.91[AMR][1000 genomes]
rs73835916	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835923	1.00[AMR][1000 genomes]
rs73835924	1.00[AMR][1000 genomes]
rs73835931	1.00[AMR][1000 genomes]
rs73835932	0.91[AMR][1000 genomes]
rs73835933	1.00[AMR][1000 genomes]
rs73835934	1.00[AMR][1000 genomes]
rs73835935	0.91[AMR][1000 genomes]
rs73835936	0.91[AMR][1000 genomes]
rs73835937	0.91[AMR][1000 genomes]
rs73835938	0.91[AMR][1000 genomes]
rs73835944	0.82[AMR][1000 genomes]
rs7655806	1.00[AMR][1000 genomes]
rs7661895	0.91[AMR][1000 genomes]
rs7664396	0.91[AMR][1000 genomes]
rs7671524	0.82[AMR][1000 genomes]
rs9686022	1.00[MEX][hapmap]
rs9990724	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102199600-102210400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:102200000-102211800	Weak transcription	HMEC	breast
3	chr4:102200600-102211800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:102201000-102213000	Weak transcription	Fetal Heart	heart
5	chr4:102201200-102218200	Weak transcription	NHEK	skin
6	chr4:102201400-102214200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:102202200-102210600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:102202400-102209200	Weak transcription	Brain Substantia Nigra	brain
9	chr4:102203800-102209200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr4:102203800-102209400	Weak transcription	Brain Angular Gyrus	brain
11	chr4:102204000-102209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:102204400-102209400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:102204800-102211200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:102205000-102209200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:102205000-102212600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:102205200-102210600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:102205600-102209200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr4:102206200-102210200	Enhancers	Ovary	ovary
19	chr4:102206200-102210200	Enhancers	Psoas Muscle	Psoas
20	chr4:102206400-102209200	Weak transcription	Primary B cells from cord blood	blood
21	chr4:102206400-102209400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:102206600-102210600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr4:102206800-102210400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr4:102207000-102209200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:102207000-102216600	Weak transcription	NH-A	brain
26	chr4:102207200-102209200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:102207200-102210000	Weak transcription	HUVEC	blood vessel
28	chr4:102207200-102212000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr4:102207400-102209800	Weak transcription	NHDF-Ad	bronchial
30	chr4:102207400-102209800	Weak transcription	Osteobl	bone
31	chr4:102207400-102212000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr4:102207400-102212000	Weak transcription	Gastric	stomach
33	chr4:102207400-102214200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:102207400-102214200	Weak transcription	Esophagus	oesophagus
35	chr4:102207600-102209600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:102207600-102211400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr4:102207600-102226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:102207800-102209400	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr4:102207800-102210200	Enhancers	Adipose Nuclei	Adipose
40	chr4:102208000-102211200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:102208000-102212400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr4:102208200-102210600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:102208200-102210600	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr4:102208400-102210200	Enhancers	Colon Smooth Muscle	Colon
45	chr4:102208400-102210800	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr4:102208400-102211200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:102208600-102209200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr4:102208600-102209200	Enhancers	Primary T cells from cord blood	blood
49	chr4:102208600-102209200	Enhancers	Stomach Smooth Muscle	stomach
50	chr4:102208600-102209400	Enhancers	H9 Cell Line	embryonic stem cell

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