Variant report

Variant	rs73833302
Chromosome Location	chr4:102185244-102185245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102161014..102163978-chr4:102184167..102186813,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11936232	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11938557	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11946138	1.00[EUR][1000 genomes]
rs1441430	1.00[EUR][1000 genomes]
rs16996716	1.00[ASN][1000 genomes]
rs17030994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58053659	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58964732	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59540931	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59814763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60815298	1.00[EUR][1000 genomes]
rs6532923	1.00[EUR][1000 genomes]
rs6836243	1.00[EUR][1000 genomes]
rs6841711	1.00[EUR][1000 genomes]
rs73833275	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73833281	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102174200-102186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:102174400-102185800	Weak transcription	HMEC	breast
3	chr4:102178000-102186600	Weak transcription	Brain Substantia Nigra	brain
4	chr4:102179000-102186800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:102180200-102185800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:102180600-102185400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:102180600-102185800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:102180600-102186200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:102180600-102186200	Weak transcription	Pancreas	Pancrea
10	chr4:102180600-102191000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:102180600-102192400	Weak transcription	Ovary	ovary
12	chr4:102180600-102197000	Weak transcription	Left Ventricle	heart
13	chr4:102180600-102203000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:102180800-102186200	Weak transcription	Gastric	stomach
15	chr4:102181200-102185800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:102181200-102186600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:102181200-102186800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:102181400-102186000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:102181800-102185600	Weak transcription	NH-A	brain
20	chr4:102182200-102186000	Weak transcription	NHEK	skin
21	chr4:102182600-102186000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:102182600-102189800	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:102182600-102192600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:102183000-102187600	Enhancers	Primary B cells from cord blood	blood
25	chr4:102183400-102186800	Enhancers	Primary B cells from peripheral blood	blood
26	chr4:102183600-102186800	Enhancers	Stomach Mucosa	stomach
27	chr4:102183800-102185400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:102183800-102185400	Enhancers	Brain Anterior Caudate	brain
29	chr4:102183800-102185600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr4:102183800-102186000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr4:102183800-102186000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr4:102183800-102188200	Enhancers	HepG2	liver
33	chr4:102184000-102186000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:102184000-102203200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr4:102184200-102185800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr4:102184200-102194600	Weak transcription	Psoas Muscle	Psoas
37	chr4:102184400-102185800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr4:102184400-102186000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:102184400-102199600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr4:102184600-102186000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:102184600-102188000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr4:102184600-102199400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr4:102185000-102185600	Weak transcription	Small Intestine	intestine
44	chr4:102185000-102187000	Enhancers	HUVEC	blood vessel
45	chr4:102185200-102185400	Flanking Active TSS	A549	lung
46	chr4:102185200-102185600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:102185200-102187200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:102185200-102192600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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