Variant report

Variant	rs7383768
Chromosome Location	chr6:12129242-12129243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12119694..12121745-chr6:12128409..12130383,2	MCF-7	breast:
2	chr6:12124460..12127178-chr6:12127673..12129762,3	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10947758	0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947793	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12199075	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12210300	0.83[JPT][hapmap]
rs12213070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13193986	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13206426	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13209918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1998528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2228209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2228210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2228213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2228215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777755	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3777760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3822925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4377779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4467770	0.83[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs4714201	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4714232	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6939913	0.88[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7752678	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9296258	0.82[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9357299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366985	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369076	0.88[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9369083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369108	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380859	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394538	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12091000-12130600	Weak transcription	Psoas Muscle	Psoas
2	chr6:12117200-12136800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:12118400-12138400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:12118800-12131400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:12119400-12129800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:12119800-12138800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:12121400-12150200	Weak transcription	Fetal Brain Male	brain
8	chr6:12121600-12136800	Weak transcription	Hela-S3	cervix
9	chr6:12122000-12134600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:12122000-12136600	Weak transcription	Osteobl	bone
11	chr6:12122000-12138200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:12122200-12132200	Weak transcription	A549	lung
13	chr6:12122200-12132200	Weak transcription	NHLF	lung
14	chr6:12122200-12137600	Weak transcription	Brain Anterior Caudate	brain
15	chr6:12122200-12137600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:12122200-12137600	Weak transcription	Brain Substantia Nigra	brain
17	chr6:12122200-12137800	Weak transcription	HMEC	breast
18	chr6:12122200-12138600	Weak transcription	Colonic Mucosa	Colon
19	chr6:12122200-12138600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:12122200-12138600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:12122200-12138800	Weak transcription	Ovary	ovary
22	chr6:12122200-12138800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:12122200-12139000	Weak transcription	Spleen	Spleen
24	chr6:12122200-12139200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:12122200-12161800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:12122400-12130600	Weak transcription	Pancreas	Pancrea
27	chr6:12122400-12136400	Weak transcription	Small Intestine	intestine
28	chr6:12122400-12138200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:12122400-12138600	Weak transcription	Lung	lung
30	chr6:12122400-12139200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:12122400-12139200	Weak transcription	Placenta	Placenta
32	chr6:12122400-12139800	Weak transcription	Esophagus	oesophagus
33	chr6:12122600-12136000	Weak transcription	Fetal Lung	lung
34	chr6:12122600-12138200	Weak transcription	Primary B cells from cord blood	blood
35	chr6:12122600-12139000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:12122800-12130000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:12122800-12130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:12122800-12132800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:12122800-12137200	Weak transcription	NHDF-Ad	bronchial
40	chr6:12122800-12137800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:12122800-12138400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:12122800-12138600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:12122800-12138600	Weak transcription	Gastric	stomach
44	chr6:12122800-12138600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:12122800-12138600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:12122800-12138800	Weak transcription	Fetal Kidney	kidney
47	chr6:12122800-12138800	Weak transcription	Right Ventricle	heart
48	chr6:12122800-12139400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:12122800-12142800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:12123000-12138600	Weak transcription	H9 Cell Line	embryonic stem cell

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