Variant report

Variant	rs3777755
Chromosome Location	chr6:12159699-12159700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12158453..12160780-chr6:12288410..12290344,2	MCF-7	breast:
2	chr6:12159346..12162270-chr6:12162477..12165476,3	K562	blood:
3	chr6:12132489..12134557-chr6:12159288..12161389,2	K562	blood:
4	chr6:12151617..12154560-chr6:12159442..12161987,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10947758	0.91[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs10947793	0.91[ASN][1000 genomes]
rs12199075	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12210300	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12213070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13193986	0.85[ASN][1000 genomes]
rs13206426	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13209918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1998528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2228209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2228210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2228213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2228215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3777760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3777761	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3777776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3822925	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4377779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4467770	0.91[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs4714201	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4714232	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6939913	0.91[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7383768	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7752678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9296258	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs9357299	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9366985	0.91[ASN][1000 genomes]
rs9369076	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs9369083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9369108	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9380790	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9380859	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394538	0.91[ASN][1000 genomes]
rs9394569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9394605	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12122200-12161800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:12137000-12163600	Weak transcription	Small Intestine	intestine
3	chr6:12139000-12161600	Weak transcription	HepG2	liver
4	chr6:12140200-12161800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:12140600-12161400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:12140600-12161400	Weak transcription	Pancreas	Pancrea
7	chr6:12140600-12161400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:12140600-12161400	Weak transcription	Spleen	Spleen
9	chr6:12140600-12161600	Weak transcription	Esophagus	oesophagus
10	chr6:12140600-12161800	Weak transcription	Gastric	stomach
11	chr6:12140600-12163600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:12140600-12163600	Weak transcription	Psoas Muscle	Psoas
13	chr6:12140600-12163800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:12140800-12160400	Weak transcription	Primary B cells from cord blood	blood
15	chr6:12140800-12160400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:12140800-12160600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:12140800-12161000	Weak transcription	Adipose Nuclei	Adipose
18	chr6:12140800-12161400	Weak transcription	Thymus	Thymus
19	chr6:12140800-12161600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:12140800-12161600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:12140800-12161800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:12140800-12161800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:12140800-12161800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:12140800-12162800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:12141000-12161600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:12141000-12161600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:12141000-12161800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:12141200-12162400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:12141800-12161600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:12148000-12161800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:12148800-12161400	Weak transcription	Left Ventricle	heart
32	chr6:12149400-12160200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:12149400-12160200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:12149400-12160400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:12149400-12160400	Weak transcription	HSMMtube	muscle
36	chr6:12149400-12160600	Weak transcription	Fetal Thymus	thymus
37	chr6:12149400-12161000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:12149400-12161800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:12149400-12163600	Weak transcription	HMEC	breast
40	chr6:12149600-12161800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:12149800-12160400	Weak transcription	NHDF-Ad	bronchial
42	chr6:12150200-12160600	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:12150200-12160800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:12150200-12161400	Weak transcription	Ovary	ovary
45	chr6:12150200-12161600	Weak transcription	Brain Germinal Matrix	brain
46	chr6:12150200-12161800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:12150400-12160200	Weak transcription	HSMM	muscle
48	chr6:12150400-12165800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr6:12150600-12160400	Weak transcription	K562	blood
50	chr6:12150600-12160600	Weak transcription	NH-A	brain

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