Variant report

Variant	rs9394605
Chromosome Location	chr6:12171157-12171158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12170203..12172670-chr6:12174688..12177744,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10755705	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10807210	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10947758	0.83[JPT][hapmap]
rs10947826	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12199075	0.81[ASN][1000 genomes]
rs12199790	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12209865	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12213070	0.88[CHD][hapmap];0.94[JPT][hapmap]
rs13209918	0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs1998528	0.90[CHD][hapmap];0.94[JPT][hapmap]
rs219965	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2228209	0.94[JPT][hapmap]
rs2228210	0.87[CHD][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs2228213	0.88[CHD][hapmap];0.94[JPT][hapmap]
rs2228215	0.88[CHD][hapmap];0.94[JPT][hapmap]
rs3777755	0.89[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs3777760	0.94[JPT][hapmap]
rs3777761	0.94[JPT][hapmap]
rs3777776	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs3822925	0.94[JPT][hapmap]
rs4377779	0.84[CHD][hapmap];0.94[JPT][hapmap]
rs4467770	0.84[JPT][hapmap]
rs62386834	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6939913	0.84[JPT][hapmap]
rs7383768	0.94[JPT][hapmap]
rs7752678	0.94[JPT][hapmap]
rs9296258	0.84[JPT][hapmap]
rs9357299	0.94[JPT][hapmap]
rs9369076	0.84[JPT][hapmap]
rs9369083	0.88[CHD][hapmap];0.94[JPT][hapmap]
rs9380781	0.88[CHD][hapmap];0.94[JPT][hapmap]
rs9380790	0.88[CHD][hapmap];0.94[JPT][hapmap]
rs9380859	0.81[ASN][1000 genomes]
rs9380878	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9394569	0.94[JPT][hapmap]
rs9394618	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12161400-12175800	Weak transcription	Brain Substantia Nigra	brain
2	chr6:12164000-12173200	Weak transcription	NH-A	brain
3	chr6:12164200-12174200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:12164200-12174800	Weak transcription	HMEC	breast
5	chr6:12164400-12174800	Weak transcription	NHEK	skin
6	chr6:12164600-12171800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:12164600-12172200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:12164600-12172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:12164600-12173800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:12164600-12174000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:12164600-12175800	Weak transcription	HSMMtube	muscle
12	chr6:12164600-12176000	Weak transcription	Gastric	stomach
13	chr6:12164800-12171200	Weak transcription	Fetal Brain Female	brain
14	chr6:12164800-12171600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:12164800-12171800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:12164800-12173400	Weak transcription	Fetal Kidney	kidney
17	chr6:12164800-12174000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:12164800-12175000	Weak transcription	NHDF-Ad	bronchial
19	chr6:12164800-12175200	Weak transcription	HSMM	muscle
20	chr6:12164800-12179800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:12164800-12180200	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:12164800-12185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:12165000-12171200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:12165000-12171600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:12165600-12174800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:12166000-12174800	Weak transcription	A549	lung
27	chr6:12166200-12174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:12170400-12172600	Enhancers	H1 Cell Line	embryonic stem cell
29	chr6:12170400-12172600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:12170600-12171200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:12170600-12171200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:12170600-12171200	Enhancers	Adipose Nuclei	Adipose
33	chr6:12170600-12171200	Enhancers	Brain Cingulate Gyrus	brain
34	chr6:12170600-12173400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:12170800-12171200	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr6:12170800-12171400	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr6:12171000-12171200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:12171000-12171400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:12171000-12171400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:12171000-12171400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:12171000-12171400	Active TSS	Brain Anterior Caudate	brain
42	chr6:12171000-12171600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr6:12171000-12171800	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr6:12171000-12172400	Enhancers	HUES64 Cell Line	embryonic stem cell

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