Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12177794..12179702-chr6:12219906..12221744,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10755704	0.93[ASN][1000 genomes]
rs10755705	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807210	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947826	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1111404	0.92[ASN][1000 genomes]
rs12199790	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12209865	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12213070	0.85[JPT][hapmap]
rs13209918	0.85[JPT][hapmap]
rs1998528	0.84[JPT][hapmap]
rs219965	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2228209	0.85[JPT][hapmap]
rs2228210	0.85[JPT][hapmap]
rs2228213	0.85[JPT][hapmap]
rs2228215	0.85[JPT][hapmap]
rs3777755	0.83[JPT][hapmap]
rs3777760	0.84[JPT][hapmap]
rs3777761	0.85[JPT][hapmap]
rs3777776	0.83[JPT][hapmap]
rs3822925	0.85[JPT][hapmap]
rs4377779	0.84[JPT][hapmap]
rs62386834	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7383768	0.85[JPT][hapmap]
rs7752678	0.84[JPT][hapmap]
rs9357299	0.85[JPT][hapmap]
rs9369083	0.85[JPT][hapmap]
rs9380781	0.85[JPT][hapmap]
rs9380790	0.85[JPT][hapmap]
rs9380878	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394569	0.85[JPT][hapmap]
rs9394605	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12164800-12179800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:12164800-12180200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:12164800-12185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:12176000-12182800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:12176200-12203400	Weak transcription	A549	lung
6	chr6:12176400-12178800	Weak transcription	Brain Cingulate Gyrus	brain

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