Variant report

Variant	rs219965
Chromosome Location	chr6:12179253-12179254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10755704	0.91[ASN][1000 genomes]
rs10755705	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10807210	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10947826	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1111404	0.90[ASN][1000 genomes]
rs12199790	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12209865	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62386834	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380878	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394605	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9394618	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12164800-12179800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:12164800-12180200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:12164800-12185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:12176000-12182800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:12176200-12203400	Weak transcription	A549	lung
6	chr6:12178800-12179600	Enhancers	Brain Cingulate Gyrus	brain
7	chr6:12178800-12179600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr6:12178800-12179800	Enhancers	Fetal Muscle Leg	muscle
9	chr6:12178800-12180000	Enhancers	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links