Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12171402..12173383-chr6:12182679..12185001,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIVEP1-5	chr6:12181685-12184230	NONHSAT107779

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10755704	0.87[ASN][1000 genomes]
rs10755705	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10807210	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1111404	0.88[ASN][1000 genomes]
rs12199790	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12209865	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12213070	0.84[CHD][hapmap];0.80[JPT][hapmap]
rs13209918	0.80[JPT][hapmap]
rs1998528	0.88[CHD][hapmap]
rs219965	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2228209	0.80[JPT][hapmap]
rs2228210	0.84[CHD][hapmap];0.80[JPT][hapmap]
rs2228213	0.84[CHD][hapmap];0.80[JPT][hapmap]
rs2228215	0.84[CHD][hapmap];0.80[JPT][hapmap]
rs3777755	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs3777761	0.80[JPT][hapmap]
rs3777776	0.81[CHB][hapmap]
rs3822925	0.80[JPT][hapmap]
rs4377779	0.84[CHD][hapmap]
rs62386834	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7383768	0.80[JPT][hapmap]
rs9357299	0.80[JPT][hapmap]
rs9369083	0.84[CHD][hapmap];0.80[JPT][hapmap]
rs9380781	0.84[CHD][hapmap];0.80[JPT][hapmap]
rs9380790	0.84[CHD][hapmap];0.80[JPT][hapmap]
rs9380878	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394569	0.80[JPT][hapmap]
rs9394605	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394618	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12164800-12185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:12176200-12203400	Weak transcription	A549	lung
3	chr6:12181000-12185400	Weak transcription	Aorta	Aorta
4	chr6:12182800-12183200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:12182800-12183200	Enhancers	Primary T cells from cord blood	blood
6	chr6:12182800-12183200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:12182800-12183200	Enhancers	NHDF-Ad	bronchial
8	chr6:12182800-12183200	Enhancers	NHLF	lung
9	chr6:12183000-12183200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:12183000-12183200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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