Variant report

Variant	rs73843297
Chromosome Location	chr3:85176098-85176099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12107265	1.00[AMR][1000 genomes]
rs57263837	0.86[AFR][1000 genomes]
rs60511748	1.00[AMR][1000 genomes]
rs72903368	1.00[AMR][1000 genomes]
rs72903392	1.00[AMR][1000 genomes]
rs72905205	1.00[AMR][1000 genomes]
rs72905208	1.00[AMR][1000 genomes]
rs72905213	1.00[AMR][1000 genomes]
rs73843283	1.00[AMR][1000 genomes]
rs73843285	1.00[AMR][1000 genomes]
rs73843287	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843288	1.00[AMR][1000 genomes]
rs73843289	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843291	1.00[AMR][1000 genomes]
rs73843292	1.00[AMR][1000 genomes]
rs73843293	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843294	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843300	1.00[AFR][1000 genomes]
rs73845409	0.86[AFR][1000 genomes]
rs73845415	0.86[AFR][1000 genomes]
rs9835616	0.86[AFR][1000 genomes]
rs9838538	0.86[AFR][1000 genomes]
rs9856305	0.86[AFR][1000 genomes]
rs9862826	0.86[AFR][1000 genomes]
rs9875722	0.86[AFR][1000 genomes]
rs9876453	0.86[AFR][1000 genomes]
rs9877705	0.86[AFR][1000 genomes]
rs9878308	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv590898	chr3:85158733-85243777	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv877095	chr3:85163167-85290434	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv877096	chr3:85163167-85366517	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv460747	chr3:85163167-85391672	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv590899	chr3:85163167-85391672	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1001124	chr3:85167047-85309046	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85168400-85177600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85169200-85198600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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