Variant report

Variant	rs9878308
Chromosome Location	chr3:85347972-85347973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56057829	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57263837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59676495	1.00[AMR][1000 genomes]
rs73843296	0.86[AFR][1000 genomes]
rs73843297	0.86[AFR][1000 genomes]
rs73843298	0.86[AFR][1000 genomes]
rs73843300	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843301	1.00[AMR][1000 genomes]
rs73845404	1.00[AMR][1000 genomes]
rs73845409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845429	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845430	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810866	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9835616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9838538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9855964	1.00[AMR][1000 genomes]
rs9856305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9862826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9877705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv877096	chr3:85163167-85366517	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv460747	chr3:85163167-85391672	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590899	chr3:85163167-85391672	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877098	chr3:85177173-85361645	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1012601	chr3:85246185-85426996	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv536618	chr3:85246185-85426996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv948806	chr3:85304744-85463443	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1013407	chr3:85307022-85460325	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
12	nsv870153	chr3:85326695-85426936	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85346400-85349800	Enhancers	Brain Substantia Nigra	brain
2	chr3:85346800-85348000	Enhancers	Brain Cingulate Gyrus	brain
3	chr3:85347000-85351000	Weak transcription	Brain Germinal Matrix	brain
4	chr3:85347400-85349800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:85347400-85349800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:85347600-85348600	Weak transcription	Brain Angular Gyrus	brain
7	chr3:85347600-85348600	Weak transcription	Brain Anterior Caudate	brain
8	chr3:85347600-85348600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:85347600-85349800	Weak transcription	Brain Hippocampus Middle	brain

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