Variant report

Variant	rs73843626
Chromosome Location	chr4:121756972-121756973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs34666716	0.93[AFR][1000 genomes]
rs55774575	0.86[AFR][1000 genomes]
rs55847539	0.93[AFR][1000 genomes]
rs55899802	0.81[AFR][1000 genomes]
rs56224440	0.81[AFR][1000 genomes]
rs56748639	0.86[AFR][1000 genomes]
rs61548510	0.86[AFR][1000 genomes]
rs61648672	0.93[AFR][1000 genomes]
rs6534208	0.93[AFR][1000 genomes]
rs6534209	0.93[AFR][1000 genomes]
rs6534212	0.93[AFR][1000 genomes]
rs6828115	0.93[AFR][1000 genomes]
rs6830205	0.93[AFR][1000 genomes]
rs73843606	0.86[AFR][1000 genomes]
rs73843607	0.86[AFR][1000 genomes]
rs73843611	0.93[AFR][1000 genomes]
rs73843616	0.93[AFR][1000 genomes]
rs73843617	0.93[AFR][1000 genomes]
rs73843619	0.93[AFR][1000 genomes]
rs73843620	0.93[AFR][1000 genomes]
rs73843621	0.93[AFR][1000 genomes]
rs73843624	0.87[AFR][1000 genomes]
rs73843627	0.93[AFR][1000 genomes]
rs73843634	0.93[AFR][1000 genomes]
rs73843635	0.93[AFR][1000 genomes]
rs73843644	0.81[AFR][1000 genomes]
rs73843647	0.81[AFR][1000 genomes]
rs73843651	0.81[AFR][1000 genomes]
rs73843653	0.81[AFR][1000 genomes]
rs73845481	0.86[AFR][1000 genomes]
rs73845489	0.86[AFR][1000 genomes]
rs73845497	0.86[AFR][1000 genomes]
rs73847105	0.86[AFR][1000 genomes]
rs7696159	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121729600-121770400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:121730400-121760000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:121730400-121760800	Weak transcription	Pancreas	Pancrea
4	chr4:121737600-121759800	Weak transcription	Lung	lung
5	chr4:121738200-121759600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:121743800-121765400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:121750400-121768400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:121751600-121762000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:121751800-121759600	Weak transcription	Ovary	ovary
10	chr4:121753400-121762600	Weak transcription	Osteobl	bone
11	chr4:121754600-121760000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:121755600-121759600	Weak transcription	Fetal Stomach	stomach
13	chr4:121755800-121760000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:121755800-121774600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:121756000-121760000	Weak transcription	Fetal Intestine Large	intestine
16	chr4:121756000-121762200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:121756000-121762200	Weak transcription	Fetal Lung	lung
18	chr4:121756200-121759800	Weak transcription	Fetal Intestine Small	intestine
19	chr4:121756400-121757200	Strong transcription	Left Ventricle	heart
20	chr4:121756600-121763600	Weak transcription	Esophagus	oesophagus
21	chr4:121756800-121759600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:121756800-121760400	Weak transcription	Fetal Heart	heart
23	chr4:121756800-121779800	Weak transcription	Aorta	Aorta

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