Variant report
| Variant | rs73847080 |
|---|---|
| Chromosome Location | chr3:94681915-94681916 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NSUN3-1 | chr3:94681774-94681940 | ENSG00000239589 |
| 2 | lnc-NSUN3-1 | chr3:94681776-94681940 | NONHSAT090739 |
| 3 | lnc-NSUN3-1 | chr3:94681743-94681940 | NR_015400 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1579543 | 1.00[AMR][1000 genomes] |
| rs57431896 | 1.00[AMR][1000 genomes] |
| rs58014210 | 1.00[AMR][1000 genomes] |
| rs58086527 | 1.00[AMR][1000 genomes] |
| rs58204392 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59975236 | 1.00[AMR][1000 genomes] |
| rs60472824 | 1.00[AMR][1000 genomes] |
| rs73847062 | 1.00[AMR][1000 genomes] |
| rs73847071 | 1.00[AMR][1000 genomes] |
| rs73847076 | 1.00[AMR][1000 genomes] |
| rs73847077 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73847085 | 1.00[AMR][1000 genomes] |
| rs73847088 | 1.00[AMR][1000 genomes] |
| rs73847092 | 1.00[AMR][1000 genomes] |
| rs73847093 | 1.00[AMR][1000 genomes] |
| rs73848726 | 1.00[AMR][1000 genomes] |
| rs73848727 | 1.00[AMR][1000 genomes] |
| rs73848734 | 1.00[AMR][1000 genomes] |
| rs973259 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877169 | chr3:94675697-94840854 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
