Variant report

Variant	rs1579543
Chromosome Location	chr3:94707427-94707428
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NSUN3-1	chr3:94707390-94707523	ENSG00000239589
2	lnc-NSUN3-1	chr3:94707390-94707523	ENSG00000239589
3	lnc-NSUN3-1	chr3:94707390-94707523	NONHSAT090739
4	lnc-NSUN3-1	chr3:94707390-94707523	NR_015400

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13317670	1.00[EUR][1000 genomes]
rs13433996	1.00[EUR][1000 genomes]
rs16853923	1.00[EUR][1000 genomes]
rs28682536	1.00[EUR][1000 genomes]
rs4384951	1.00[EUR][1000 genomes]
rs57431896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58014210	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58086527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58204392	1.00[AMR][1000 genomes]
rs59975236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60472824	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6414229	1.00[EUR][1000 genomes]
rs73846915	1.00[EUR][1000 genomes]
rs73847062	1.00[AMR][1000 genomes]
rs73847071	1.00[AMR][1000 genomes]
rs73847076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847077	1.00[AMR][1000 genomes]
rs73847080	1.00[AMR][1000 genomes]
rs73847085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847088	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847092	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847093	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73850322	1.00[EUR][1000 genomes]
rs7628702	1.00[EUR][1000 genomes]
rs9288849	1.00[EUR][1000 genomes]
rs973259	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9823394	1.00[EUR][1000 genomes]
rs9861253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877169	chr3:94675697-94840854	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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