Variant report
| Variant | rs6414229 |
|---|---|
| Chromosome Location | chr3:94678116-94678117 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:16)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:16 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | TCF7L2 | chr3:94677933-94678236 | MCF-7 | breast: | n/a | n/a |
| 2 | GATA3 | chr3:94677955-94678451 | MCF-7 | breast: | n/a | n/a |
| 3 | HDAC2 | chr3:94677991-94678319 | MCF-7 | breast: | n/a | n/a |
| 4 | GATA3 | chr3:94677891-94678349 | MCF-7 | breast: | n/a | n/a |
| 5 | GATA3 | chr3:94677742-94678462 | MCF-7 | breast: | n/a | n/a |
| 6 | CEBPB | chr3:94677923-94678286 | MCF-7 | breast: | n/a | chr3:94678081-94678092 chr3:94678080-94678093 chr3:94678080-94678091 chr3:94678080-94678093 |
| 7 | NR2F2 | chr3:94677942-94678332 | MCF-7 | breast: | n/a | chr3:94678307-94678322 |
| 8 | ZNF217 | chr3:94677936-94678380 | MCF-7 | breast: | n/a | n/a |
| 9 | TCF12 | chr3:94677731-94678486 | MCF-7 | breast: | n/a | n/a |
| 10 | CEBPB | chr3:94677790-94678168 | HepG2 | liver: | n/a | chr3:94678081-94678092 chr3:94678080-94678093 chr3:94678080-94678091 chr3:94678080-94678093 |
| 11 | GATA3 | chr3:94677959-94678257 | T-47D | breast: | n/a | n/a |
| 12 | EP300 | chr3:94677961-94678335 | MCF-7 | breast: | n/a | chr3:94678078-94678092 |
| 13 | CEBPB | chr3:94677749-94678401 | MCF-7 | breast: | n/a | chr3:94678081-94678092 chr3:94678080-94678093 chr3:94678080-94678091 chr3:94678080-94678093 |
| 14 | CEBPB | chr3:94677717-94678167 | IMR90 | lung: | n/a | chr3:94678081-94678092 chr3:94678080-94678093 chr3:94678080-94678091 chr3:94678080-94678093 |
| 15 | SIN3AK20 | chr3:94677858-94678332 | MCF-7 | breast: | n/a | n/a |
| 16 | GATA3 | chr3:94677828-94678336 | MCF-7 | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| LINC00879 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1579543 | 1.00[EUR][1000 genomes] |
| rs16853923 | 1.00[EUR][1000 genomes] |
| rs28682536 | 1.00[EUR][1000 genomes] |
| rs4384951 | 1.00[EUR][1000 genomes] |
| rs57431896 | 1.00[EUR][1000 genomes] |
| rs58014210 | 1.00[EUR][1000 genomes] |
| rs58086527 | 1.00[EUR][1000 genomes] |
| rs59975236 | 1.00[EUR][1000 genomes] |
| rs60472824 | 1.00[EUR][1000 genomes] |
| rs73847076 | 1.00[EUR][1000 genomes] |
| rs73847085 | 1.00[EUR][1000 genomes] |
| rs73847088 | 1.00[EUR][1000 genomes] |
| rs73847092 | 1.00[EUR][1000 genomes] |
| rs73847093 | 1.00[EUR][1000 genomes] |
| rs73848726 | 1.00[EUR][1000 genomes] |
| rs73848727 | 1.00[EUR][1000 genomes] |
| rs73848734 | 1.00[EUR][1000 genomes] |
| rs73850322 | 1.00[EUR][1000 genomes] |
| rs7628702 | 1.00[EUR][1000 genomes] |
| rs973259 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877169 | chr3:94675697-94840854 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
