Variant report
| Variant | rs7628702 |
|---|---|
| Chromosome Location | chr3:94596029-94596030 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1579543 | 1.00[EUR][1000 genomes] |
| rs4384951 | 1.00[EUR][1000 genomes] |
| rs57431896 | 1.00[EUR][1000 genomes] |
| rs58014210 | 1.00[EUR][1000 genomes] |
| rs58086527 | 1.00[EUR][1000 genomes] |
| rs59975236 | 1.00[EUR][1000 genomes] |
| rs60472824 | 1.00[EUR][1000 genomes] |
| rs6414229 | 1.00[EUR][1000 genomes] |
| rs73847076 | 1.00[EUR][1000 genomes] |
| rs73847085 | 1.00[EUR][1000 genomes] |
| rs73847088 | 1.00[EUR][1000 genomes] |
| rs73847092 | 1.00[EUR][1000 genomes] |
| rs73847093 | 1.00[EUR][1000 genomes] |
| rs73848726 | 1.00[EUR][1000 genomes] |
| rs73848727 | 1.00[EUR][1000 genomes] |
| rs73848734 | 1.00[EUR][1000 genomes] |
| rs973259 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460763 | chr3:94384332-94596072 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv590988 | chr3:94384332-94596072 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv877168 | chr3:94430430-94614333 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv460764 | chr3:94479849-94654181 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv590989 | chr3:94479849-94654181 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:94594200-94610000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
