Variant report

Variant	rs73847356
Chromosome Location	chr4:129922149-129922150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs55707740	0.91[AFR][1000 genomes]
rs55714747	0.91[AFR][1000 genomes]
rs55764329	0.82[AFR][1000 genomes]
rs55955516	0.91[AFR][1000 genomes]
rs56002856	0.91[AFR][1000 genomes]
rs56069250	0.91[AFR][1000 genomes]
rs56721576	0.91[AFR][1000 genomes]
rs57542268	0.91[AFR][1000 genomes]
rs58053026	0.82[AFR][1000 genomes]
rs58701517	0.91[AFR][1000 genomes]
rs60005322	0.91[AFR][1000 genomes]
rs61267810	0.91[AFR][1000 genomes]
rs61700015	0.91[AFR][1000 genomes]
rs73847304	0.82[AFR][1000 genomes]
rs73847305	0.91[AFR][1000 genomes]
rs73847310	0.82[AFR][1000 genomes]
rs73847314	0.82[AFR][1000 genomes]
rs73847316	0.91[AFR][1000 genomes]
rs73847317	0.91[AFR][1000 genomes]
rs73847322	0.91[AFR][1000 genomes]
rs73847323	0.91[AFR][1000 genomes]
rs73847326	0.91[AFR][1000 genomes]
rs73847327	0.91[AFR][1000 genomes]
rs73847329	0.91[AFR][1000 genomes]
rs73847331	0.91[AFR][1000 genomes]
rs73847332	0.91[AFR][1000 genomes]
rs73847333	0.91[AFR][1000 genomes]
rs73847334	0.91[AFR][1000 genomes]
rs73847341	0.91[AFR][1000 genomes]
rs73847342	0.91[AFR][1000 genomes]
rs73847345	0.91[AFR][1000 genomes]
rs73847347	0.91[AFR][1000 genomes]
rs73847354	0.91[AFR][1000 genomes]
rs73847355	0.91[AFR][1000 genomes]
rs73847358	0.91[AFR][1000 genomes]
rs73847375	0.91[AFR][1000 genomes]
rs73847378	0.91[AFR][1000 genomes]
rs73847380	0.91[AFR][1000 genomes]
rs73847392	0.91[AFR][1000 genomes]
rs73848906	0.82[AFR][1000 genomes]
rs73848910	0.91[AFR][1000 genomes]
rs73848913	0.91[AFR][1000 genomes]
rs73848934	0.91[AFR][1000 genomes]
rs73850012	0.82[AFR][1000 genomes]
rs73850027	0.91[AFR][1000 genomes]
rs73850035	0.91[AFR][1000 genomes]
rs73850039	0.91[AFR][1000 genomes]
rs73850061	0.91[AFR][1000 genomes]
rs73850062	0.82[AFR][1000 genomes]
rs73850063	0.82[AFR][1000 genomes]
rs73850064	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv517249	chr4:129738328-129927804	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1026938	chr4:129770961-129936205	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1030513	chr4:129770961-129965026	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv870175	chr4:129771718-129937945	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1026772	chr4:129773881-129936205	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv461637	chr4:129774375-129924977	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv595397	chr4:129774375-129924977	Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv461638	chr4:129774375-129927804	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv595398	chr4:129774375-129927804	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv1018994	chr4:129775612-129933968	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1026722	chr4:129801602-129929219	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv537252	chr4:129801602-129929219	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv595399	chr4:129835649-129924852	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv522694	chr4:129862073-129994690	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129862400-129924200	Weak transcription	Colonic Mucosa	Colon
2	chr4:129868200-129935600	Weak transcription	HSMM	muscle
3	chr4:129878400-129925600	Weak transcription	HSMMtube	muscle
4	chr4:129883200-129923400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr4:129902400-129922400	Weak transcription	NH-A	brain
6	chr4:129906200-129935800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:129908200-129927000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:129908400-129922400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:129909000-129923600	Weak transcription	Adipose Nuclei	Adipose
10	chr4:129911400-129936800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:129912000-129923600	Weak transcription	Fetal Lung	lung
12	chr4:129917200-129926000	Weak transcription	Ovary	ovary
13	chr4:129917400-129922400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr4:129917400-129922400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:129917400-129923200	Weak transcription	Thymus	Thymus
16	chr4:129917400-129923400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:129917400-129924200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:129917400-129927200	Weak transcription	Primary B cells from cord blood	blood
19	chr4:129917400-129935800	Weak transcription	Pancreas	Pancrea
20	chr4:129917400-129936000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:129917400-129936200	Weak transcription	Left Ventricle	heart
22	chr4:129917400-129942400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:129917600-129924000	Weak transcription	Dnd41	blood
24	chr4:129917600-129926800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:129920200-129926000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:129920400-129925000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:129920600-129922400	Weak transcription	GM12878-XiMat	blood
28	chr4:129920600-129924400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:129920600-129926800	Weak transcription	NHDF-Ad	bronchial
30	chr4:129920600-129927600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr4:129920600-129936000	Weak transcription	Fetal Thymus	thymus
32	chr4:129920800-129927000	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:129921000-129923000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr4:129921000-129923600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links