Variant report

Variant	rs55955516
Chromosome Location	chr4:130042816-130042817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs55707740	1.00[AFR][1000 genomes]
rs55714747	1.00[AFR][1000 genomes]
rs55764329	0.91[AFR][1000 genomes]
rs56002856	1.00[AFR][1000 genomes]
rs56069250	1.00[AFR][1000 genomes]
rs56721576	1.00[AFR][1000 genomes]
rs57243721	0.83[AFR][1000 genomes]
rs57542268	1.00[AFR][1000 genomes]
rs57869637	1.00[AMR][1000 genomes]
rs58053026	0.91[AFR][1000 genomes]
rs58701517	1.00[AFR][1000 genomes]
rs60005322	1.00[AFR][1000 genomes]
rs60064190	1.00[AMR][1000 genomes]
rs60227965	0.83[AFR][1000 genomes]
rs61267810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61700015	1.00[AFR][1000 genomes]
rs73847304	0.91[AFR][1000 genomes]
rs73847305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847307	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847310	0.91[AFR][1000 genomes]
rs73847314	0.91[AFR][1000 genomes]
rs73847316	1.00[AFR][1000 genomes]
rs73847317	1.00[AFR][1000 genomes]
rs73847322	1.00[AFR][1000 genomes]
rs73847323	1.00[AFR][1000 genomes]
rs73847326	1.00[AFR][1000 genomes]
rs73847327	1.00[AFR][1000 genomes]
rs73847329	1.00[AFR][1000 genomes]
rs73847331	1.00[AFR][1000 genomes]
rs73847332	1.00[AFR][1000 genomes]
rs73847333	1.00[AFR][1000 genomes]
rs73847334	1.00[AFR][1000 genomes]
rs73847341	1.00[AFR][1000 genomes]
rs73847342	1.00[AFR][1000 genomes]
rs73847345	1.00[AFR][1000 genomes]
rs73847347	1.00[AFR][1000 genomes]
rs73847354	1.00[AFR][1000 genomes]
rs73847355	1.00[AFR][1000 genomes]
rs73847356	0.91[AFR][1000 genomes]
rs73847358	1.00[AFR][1000 genomes]
rs73847375	1.00[AFR][1000 genomes]
rs73847378	1.00[AFR][1000 genomes]
rs73847380	1.00[AFR][1000 genomes]
rs73847383	0.83[AFR][1000 genomes]
rs73847391	0.83[AFR][1000 genomes]
rs73847392	1.00[AFR][1000 genomes]
rs73847395	0.83[AFR][1000 genomes]
rs73847398	0.83[AFR][1000 genomes]
rs73847399	0.83[AFR][1000 genomes]
rs73848906	0.91[AFR][1000 genomes]
rs73848910	1.00[AFR][1000 genomes]
rs73848913	1.00[AFR][1000 genomes]
rs73848917	1.00[AMR][1000 genomes]
rs73848934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848943	1.00[AMR][1000 genomes]
rs73848945	1.00[AMR][1000 genomes]
rs73848949	1.00[AMR][1000 genomes]
rs73850035	1.00[AFR][1000 genomes]
rs73850039	1.00[AFR][1000 genomes]
rs73850061	1.00[AFR][1000 genomes]
rs73850062	0.91[AFR][1000 genomes]
rs73850063	0.91[AFR][1000 genomes]
rs73850064	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130032400-130052200	Weak transcription	Aorta	Aorta
2	chr4:130036000-130044600	Weak transcription	Pancreas	Pancrea

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