Variant report

Variant	rs73847391
Chromosome Location	chr4:129964958-129964959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs55707740	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55714747	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55753141	1.00[AMR][1000 genomes]
rs55955516	0.83[AFR][1000 genomes]
rs56002856	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56069250	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56721576	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57056827	1.00[AMR][1000 genomes]
rs57243721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57542268	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58701517	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58799593	1.00[AMR][1000 genomes]
rs60005322	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60227965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61267810	0.83[AFR][1000 genomes]
rs61700015	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847304	1.00[AMR][1000 genomes]
rs73847305	0.83[AFR][1000 genomes]
rs73847312	1.00[AMR][1000 genomes]
rs73847313	1.00[AMR][1000 genomes]
rs73847314	1.00[AMR][1000 genomes]
rs73847316	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847317	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847322	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847323	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847326	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847327	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847329	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847331	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847332	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847333	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847334	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847341	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847342	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847345	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847347	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847354	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847355	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847358	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847375	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847378	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847380	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847383	1.00[AMR][1000 genomes]
rs73847392	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847398	1.00[AFR][1000 genomes]
rs73847399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848906	1.00[AMR][1000 genomes]
rs73848910	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848913	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848934	0.83[AFR][1000 genomes]
rs73850005	1.00[AMR][1000 genomes]
rs73850009	1.00[AMR][1000 genomes]
rs73850010	1.00[AMR][1000 genomes]
rs73850011	1.00[AMR][1000 genomes]
rs73850012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850013	1.00[AMR][1000 genomes]
rs73850015	1.00[AMR][1000 genomes]
rs73850016	1.00[AMR][1000 genomes]
rs73850017	1.00[AMR][1000 genomes]
rs73850018	1.00[AMR][1000 genomes]
rs73850019	1.00[AMR][1000 genomes]
rs73850027	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850028	1.00[AMR][1000 genomes]
rs73850035	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850039	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850041	1.00[AMR][1000 genomes]
rs73850059	1.00[AMR][1000 genomes]
rs73850061	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850064	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1030513	chr4:129770961-129965026	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv522694	chr4:129862073-129994690	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129944800-129965400	Weak transcription	Ovary	ovary
2	chr4:129945600-129981800	Weak transcription	Thymus	Thymus
3	chr4:129951200-129967200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:129951400-129976200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:129953600-129965600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:129953600-129965600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:129955000-129965200	Weak transcription	K562	blood
8	chr4:129957000-129965400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:129958800-129965400	Weak transcription	Adipose Nuclei	Adipose
10	chr4:129958800-129965400	Weak transcription	Liver	Liver
11	chr4:129958800-129966400	Weak transcription	Fetal Thymus	thymus
12	chr4:129959800-129965600	Weak transcription	Fetal Intestine Small	intestine
13	chr4:129959800-129966000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:129961200-129965400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:129961400-129965400	Weak transcription	Primary B cells from cord blood	blood
16	chr4:129961400-129965600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:129961400-129967800	Weak transcription	HSMM	muscle
18	chr4:129961600-129965200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:129961600-129965200	Weak transcription	Primary T cells from cord blood	blood
20	chr4:129961600-129965400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:129962600-129965000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:129962800-129965400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:129963000-129965400	Weak transcription	Spleen	Spleen
24	chr4:129964400-129965400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:129964400-129966400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr4:129964800-129965000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr4:129964800-129965000	Enhancers	Fetal Lung	lung
28	chr4:129964800-129965000	Enhancers	Fetal Stomach	stomach
29	chr4:129964800-129965000	ZNF genes & repeats	GM12878-XiMat	blood
30	chr4:129964800-129965200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links