Variant report

Variant	rs73847629
Chromosome Location	chr3:89613683-89613684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56146626	1.00[EUR][1000 genomes]
rs56368567	1.00[EUR][1000 genomes]
rs58175834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58451567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58750920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59555998	1.00[AMR][1000 genomes]
rs60138970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847618	1.00[AMR][1000 genomes]
rs73847630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73847689	1.00[EUR][1000 genomes]
rs73847696	1.00[EUR][1000 genomes]
rs73847701	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv590952	chr3:89493167-89727198	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010021	chr3:89521983-90141988	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv530024	chr3:89548440-90304841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv428743	chr3:89584946-89689096	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89613000-89614800	Enhancers	HMEC	breast
2	chr3:89613200-89614400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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