Variant report

Variant	rs73850442
Chromosome Location	chr3:79986626-79986627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55730539	0.89[AFR][1000 genomes]
rs56055599	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58800496	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58911301	1.00[EUR][1000 genomes]
rs59737693	0.80[AFR][1000 genomes]
rs73850446	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73850448	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73850468	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73850471	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73850472	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73850478	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73850483	0.89[AFR][1000 genomes]
rs73850484	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79986200-79987800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:79986400-79987200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:79986400-79988000	Enhancers	Hela-S3	cervix
4	chr3:79986600-79987200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:79986600-79987400	Enhancers	HMEC	breast
6	chr3:79986600-79987600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:79986600-79987600	Enhancers	Stomach Mucosa	stomach
8	chr3:79986600-79987600	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links